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INDEXED
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ConfigurationFile
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IGVFFI3413OPMR
IGVFFI3413OPMR
released
validated
Json view
File Set
IGVFDS5059CAEA
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI7369NKEK, IGVFFI9045QQYW, IGVFFI8697PXJF, IGVFFI9173OCRB
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp13_atac_10x4_NGS3
md5sum
d379090e6cfabdd33dc823aaa924f9c1
Content MD5sum
31d07993681907889fdc9bf66fca6c4a
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp13_atac_10x4_NGS3_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI7369NKEK
fastq
reads
1
Barcode index
Illumina NovaSeq X
22JL3GLT3
3
5.2 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8697PXJF
fastq
reads
1
Read 1
Illumina NovaSeq X
22JL3GLT3
3
9.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9045QQYW
fastq
reads
1
Illumina NovaSeq X
22JL3GLT3
3
2.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9173OCRB
fastq
reads
1
Read 2
Illumina NovaSeq X
22JL3GLT3
3
9.2 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4220ALCU
MultiplexedSample
left coronary artery
coronary artery disorder
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples