IGVFFI3413OPMR

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI3413OPMR/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3413OPMR",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp13_atac_10x4_NGS3"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "31d07993681907889fdc9bf66fca6c4a",
23    "content_type": "seqspec",
24    "creation_timestamp": "2024-09-18T02:34:02.749299+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS5059CAEA/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS5059CAEA",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002762/",
36            "term_name": "single-nucleus ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/multiplexed-samples/IGVFSM4220ALCU/",
42                "@type": [
43                    "MultiplexedSample",
44                    "Sample",
45                    "Item"
46                ],
47                "accession": "IGVFSM4220ALCU",
48                "classifications": [
49                    "tissue",
50                    "multiplexed sample"
51                ],
52                "disease_terms": [
53                    {
54                        "@id": "/phenotype-terms/MONDO_0005010/",
55                        "@type": [
56                            "PhenotypeTerm",
57                            "OntologyTerm",
58                            "Item"
59                        ],
60                        "status": "released",
61                        "summary": "coronary artery disorder",
62                        "term_name": "coronary artery disorder"
63                    }
64                ],
65                "modifications": [],
66                "sample_terms": [
67                    {
68                        "@id": "/sample-terms/UBERON_0001626/",
69                        "status": "released",
70                        "term_name": "left coronary artery"
71                    }
72                ],
73                "status": "released",
74                "summary": "multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples",
75                "taxa": "Homo sapiens",
76                "treatments": []
77            }
78        ],
79        "status": "released",
80        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
81    },
82    "file_size": 1377,
83    "gene_list_for": [],
84    "href": "/configuration-files/IGVFFI3413OPMR/@@download/IGVFFI3413OPMR.yaml.gz",
85    "input_file_for": [],
86    "integrated_in": [],
87    "lab": {
88        "@id": "/labs/ansuman-satpathy/",
89        "title": "Ansuman Satpathy, Stanford"
90    },
91    "loci_list_for": [],
92    "md5sum": "d379090e6cfabdd33dc823aaa924f9c1",
93    "quality_metrics": [],
94    "release_timestamp": "2025-03-22T00:40:25.756345+00:00",
95    "s3_uri": "s3://igvf-files/2024/09/18/a39c88ac-20fa-40be-b2ce-29662c678727/IGVFFI3413OPMR.yaml.gz",
96    "schema_version": "7",
97    "seqspec_of": [
98        "/sequence-files/IGVFFI7369NKEK/",
99        "/sequence-files/IGVFFI9045QQYW/",
100        "/sequence-files/IGVFFI8697PXJF/",
101        "/sequence-files/IGVFFI9173OCRB/"
102    ],
103    "status": "released",
104    "submitted_by": {
105        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
106        "title": "Christopher Mcginnis"
107    },
108    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp13_atac_10x4_NGS3_atac_seqspec.yaml.gz",
109    "summary": "seqspec of IGVFFI7369NKEK, IGVFFI9045QQYW, IGVFFI8697PXJF, IGVFFI9173OCRB",
110    "upload_status": "validated",
111    "uuid": "a39c88ac-20fa-40be-b2ce-29662c678727",
112    "validate_onlist_files": true
113}