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INDEXED
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/
ConfigurationFile
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IGVFFI3400UXVN
IGVFFI3400UXVN
released
validated
Json view
File Set
IGVFDS2231YIUR
(single-nucleus ATAC-seq (10x multiome))
Summary
seqspec of IGVFFI0202DLYT, IGVFFI7843MNNG, IGVFFI3434AHJW, IGVFFI7916QZSQ
File Format
yaml
Content Type
seqspec
Aliases
chongyuan-luo:ys3e_snATAC_L3_seqspec
md5sum
60ebf9c93ea5690a638fdcb9f67fd82b
Content MD5sum
ccb6016df7838988e1ec93d982db0530
File Size
1.3 KB
Submitted File Name
/home/ec2-user/igvf/submit/yaml/year2/multiome/atac/ys3e.L3.yaml.gz
Checkfiles Version
v20
Attribution
Kathrin Plath, UCLA
(
HG012079
—
Chongyuan Luo
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0202DLYT
fastq
reads
1
Read 1
Illumina NovaSeq 6000
3
2.0 GB
Kathrin Plath, UCLA
validated
IGVFFI3434AHJW
fastq
reads
1
Barcode index
Illumina NovaSeq 6000
3
5.0 GB
Kathrin Plath, UCLA
validated
IGVFFI7843MNNG
fastq
reads
1
Read 1
Illumina NovaSeq 6000
3
15 GB
Kathrin Plath, UCLA
validated
IGVFFI7916QZSQ
fastq
reads
1
Read 2
Illumina NovaSeq 6000
3
16 GB
Kathrin Plath, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2167MERL
MultiplexedSample
fibroblast
multiplexed sample: Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 1 day; Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days; ... and 2 more samples