IGVFFI3400UXVN

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI3400UXVN/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3400UXVN",
10    "aliases": [
11        "chongyuan-luo:ys3e_snATAC_L3_seqspec"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012079/",
19        "component": "networks"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "ccb6016df7838988e1ec93d982db0530",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-19T00:09:27.450999+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS2231YIUR/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS2231YIUR",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002762/",
36            "term_name": "single-nucleus ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/multiplexed-samples/IGVFSM2167MERL/",
42                "@type": [
43                    "MultiplexedSample",
44                    "Sample",
45                    "Item"
46                ],
47                "accession": "IGVFSM2167MERL",
48                "classifications": [
49                    "reprogrammed cell specimen",
50                    "multiplexed sample"
51                ],
52                "disease_terms": [],
53                "modifications": [],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/CL_0000057/",
57                        "status": "released",
58                        "term_name": "fibroblast"
59                    }
60                ],
61                "status": "released",
62                "summary": "multiplexed sample: Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 1 day; Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days; ... and 2 more samples",
63                "taxa": "Homo sapiens",
64                "treatments": []
65            }
66        ],
67        "status": "released",
68        "summary": "single-nucleus ATAC-seq (10x multiome)"
69    },
70    "file_size": 1296,
71    "gene_list_for": [],
72    "href": "/configuration-files/IGVFFI3400UXVN/@@download/IGVFFI3400UXVN.yaml.gz",
73    "input_file_for": [],
74    "integrated_in": [],
75    "lab": {
76        "@id": "/labs/kathrin-plath/",
77        "title": "Kathrin Plath, UCLA"
78    },
79    "loci_list_for": [],
80    "md5sum": "60ebf9c93ea5690a638fdcb9f67fd82b",
81    "quality_metrics": [],
82    "release_timestamp": "2025-03-27T21:33:16.279113+00:00",
83    "s3_uri": "s3://igvf-files/2025/03/19/0f6478ff-6da9-4e2a-b18e-178ea1fa31d3/IGVFFI3400UXVN.yaml.gz",
84    "schema_version": "7",
85    "seqspec_of": [
86        "/sequence-files/IGVFFI0202DLYT/",
87        "/sequence-files/IGVFFI7843MNNG/",
88        "/sequence-files/IGVFFI3434AHJW/",
89        "/sequence-files/IGVFFI7916QZSQ/"
90    ],
91    "status": "released",
92    "submitted_by": {
93        "@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
94        "title": "Terence Li"
95    },
96    "submitted_file_name": "/home/ec2-user/igvf/submit/yaml/year2/multiome/atac/ys3e.L3.yaml.gz",
97    "summary": "seqspec of IGVFFI0202DLYT, IGVFFI7843MNNG, IGVFFI3434AHJW, IGVFFI7916QZSQ",
98    "upload_status": "validated",
99    "uuid": "0f6478ff-6da9-4e2a-b18e-178ea1fa31d3",
100    "validate_onlist_files": true
101}