Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Resources
Data Model
About
Help
Sign In
INDEXED
Home
/
ConfigurationFile
/
IGVFFI2789XFWJ
IGVFFI2789XFWJ
released
validated
Json view
File Set
IGVFDS2108XESQ
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI4991KQMH, IGVFFI0060PNZQ, IGVFFI2875ZLRI, IGVFFI5847LLGI
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp9_atac_10x2_NGS2
md5sum
caf407f0a5a446c0aa7465db41c88077
Content MD5sum
d2706d03474df66acd303c1ad721eb08
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp9_atac_10x2_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0060PNZQ
fastq
reads
1
Illumina NovaSeq X
223JGVLT3
6
2.7 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2875ZLRI
fastq
reads
1
Barcode index
Illumina NovaSeq X
223JGVLT3
6
6.7 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4991KQMH
fastq
reads
1
Read 1
Illumina NovaSeq X
223JGVLT3
6
12 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5847LLGI
fastq
reads
1
Read 2
Illumina NovaSeq X
223JGVLT3
6
12 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2512OHNK
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford