IGVFFI2789XFWJ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI2789XFWJ/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2789XFWJ",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp9_atac_10x2_NGS2"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "d2706d03474df66acd303c1ad721eb08",
23    "content_type": "seqspec",
24    "creation_timestamp": "2024-09-18T02:43:59.599744+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS2108XESQ/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS2108XESQ",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002762/",
36            "term_name": "single-nucleus ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/multiplexed-samples/IGVFSM2512OHNK/",
42                "@type": [
43                    "MultiplexedSample",
44                    "Sample",
45                    "Item"
46                ],
47                "accession": "IGVFSM2512OHNK",
48                "classifications": [
49                    "differentiated cell specimen",
50                    "multiplexed sample"
51                ],
52                "disease_terms": [],
53                "modifications": [],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/CL_0000236/",
57                        "status": "released",
58                        "term_name": "B cell"
59                    }
60                ],
61                "status": "released",
62                "summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples",
63                "taxa": "Homo sapiens",
64                "treatments": []
65            }
66        ],
67        "status": "released",
68        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
69    },
70    "file_size": 1375,
71    "gene_list_for": [],
72    "href": "/configuration-files/IGVFFI2789XFWJ/@@download/IGVFFI2789XFWJ.yaml.gz",
73    "input_file_for": [],
74    "integrated_in": [],
75    "lab": {
76        "@id": "/labs/ansuman-satpathy/",
77        "title": "Ansuman Satpathy, Stanford"
78    },
79    "loci_list_for": [],
80    "md5sum": "caf407f0a5a446c0aa7465db41c88077",
81    "quality_metrics": [],
82    "release_timestamp": "2025-03-22T00:38:23.395779+00:00",
83    "s3_uri": "s3://igvf-files/2024/09/18/40f48fe3-38e2-4d67-ab39-f70a3b2a1236/IGVFFI2789XFWJ.yaml.gz",
84    "schema_version": "7",
85    "seqspec_of": [
86        "/sequence-files/IGVFFI4991KQMH/",
87        "/sequence-files/IGVFFI0060PNZQ/",
88        "/sequence-files/IGVFFI2875ZLRI/",
89        "/sequence-files/IGVFFI5847LLGI/"
90    ],
91    "status": "released",
92    "submitted_by": {
93        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
94        "title": "Christopher Mcginnis"
95    },
96    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp9_atac_10x2_NGS2_atac_seqspec.yaml.gz",
97    "summary": "seqspec of IGVFFI4991KQMH, IGVFFI0060PNZQ, IGVFFI2875ZLRI, IGVFFI5847LLGI",
98    "upload_status": "validated",
99    "uuid": "40f48fe3-38e2-4d67-ab39-f70a3b2a1236",
100    "validate_onlist_files": true
101}