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INDEXED
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ConfigurationFile
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IGVFFI2338JGPU
IGVFFI2338JGPU
released
validated
Json view
File Set
IGVFDS6262VTZI
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI1798FGFJ, IGVFFI5048OHPW, IGVFFI2138QDHS, IGVFFI2213LSTT
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp5_rna_10x3_NGS1
md5sum
7ee33c8d90f8fff4efeae310a7244b7c
Content MD5sum
df493a826546cc84b28ad2c7d73177c9
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp5_rna_10x3_NGS1_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1798FGFJ
fastq
reads
1
Illumina NovaSeq X
223JJCLT3
5
846 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2138QDHS
fastq
reads
1
Illumina NovaSeq X
223JJCLT3
5
892 MB
Ansuman Satpathy, Stanford
validated
IGVFFI2213LSTT
fastq
reads
1
Read 2
Illumina NovaSeq X
223JJCLT3
5
6.2 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5048OHPW
fastq
reads
1
Read 1
Illumina NovaSeq X
223JJCLT3
5
2.8 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7875RUGJ
MultiplexedSample
GM25256 (WTC-11)
,
H1-hESC
,
H9
,
HEK293T
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford