IGVFFI2338JGPU

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI2338JGPU/",
    "@type": [
        "ConfigurationFile",
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        "Item"
    ],
    "accession": "IGVFFI2338JGPU",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp5_rna_10x3_NGS1"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "df493a826546cc84b28ad2c7d73177c9",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T02:40:59.574127+00:00",
    "file_format": "yaml",
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        "@id": "/measurement-sets/IGVFDS6262VTZI/",
        "accession": "IGVFDS6262VTZI",
        "file_set_type": "experimental data",
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            {
                "@id": "/multiplexed-samples/IGVFSM7875RUGJ/",
                "accession": "IGVFSM7875RUGJ",
                "classifications": [
                    "cell line",
                    "differentiated cell specimen",
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                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0001184/",
                        "status": "released",
                        "term_name": "HEK293T"
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                        "@id": "/sample-terms/EFO_0003042/",
                        "status": "released",
                        "term_name": "H1-hESC"
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                        "status": "released",
                        "term_name": "H9"
                    },
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
    },
    "file_size": 1394,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI2338JGPU/@@download/IGVFFI2338JGPU.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "7ee33c8d90f8fff4efeae310a7244b7c",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:12:28.054619+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/ec919d9f-f0f6-4d52-abca-507ab418e620/IGVFFI2338JGPU.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
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        "/sequence-files/IGVFFI5048OHPW/",
        "/sequence-files/IGVFFI2138QDHS/",
        "/sequence-files/IGVFFI2213LSTT/"
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    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp5_rna_10x3_NGS1_rna_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI1798FGFJ, IGVFFI5048OHPW, IGVFFI2138QDHS, IGVFFI2213LSTT",
    "upload_status": "validated",
    "uuid": "ec919d9f-f0f6-4d52-abca-507ab418e620",
    "validate_onlist_files": true
}