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IGVFFI1426OVDM

released
validated
File Set
IGVFDS6896VSKX(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
seqspec of IGVFFI4606KWZQ, IGVFFI9778ISFP, IGVFFI9026YNOD
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_rna_CRUDO_TAPseq_Auxin6hrs-Rep1-S4
md5sum
5bfa82e6247f38886ffa36e1940f4b2d
Content MD5sum
e5d551dabbd23039c618d2a18ecf8230
File Size
1.0 KB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin6hrs-Rep1-S4.rna.yaml.gz

seqspec File Of

3 items
fastq
reads
1
4
1.2 GB
Jesse Engreitz, Stanford
validated
fastq
reads
1
4
2.7 GB
Jesse Engreitz, Stanford
validated
fastq
reads
1
4
344 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford