IGVFFI1426OVDM

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI1426OVDM/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI1426OVDM",
    "aliases": [
        "jesse-engreitz:seqspecfile_rna_CRUDO_TAPseq_Auxin6hrs-Rep1-S4"
    ],
    "assay_titles": [
        "TAP-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "content_md5sum": "e5d551dabbd23039c618d2a18ecf8230",
    "content_type": "seqspec",
    "creation_timestamp": "2024-06-20T17:16:32.325733+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS6896VSKX/",
        "accession": "IGVFDS6896VSKX",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM9983LVUX/",
                "accession": "IGVFSM9983LVUX",
                "classifications": [
                    "cell line"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0002824/",
                        "term_name": "HCT116"
                    }
                ],
                "summary": "HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
                "taxa": "Homo sapiens"
            }
        ],
        "summary": "mixed TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci"
    },
    "file_size": 1047,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI1426OVDM/@@download/IGVFFI1426OVDM.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jesse-engreitz/",
        "title": "Jesse Engreitz, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "5bfa82e6247f38886ffa36e1940f4b2d",
    "release_timestamp": "2024-07-10T19:53:42.007700+00:00",
    "s3_uri": "s3://igvf-files/2024/06/20/3e0632c6-17f3-42e5-aeb0-4619382c01b2/IGVFFI1426OVDM.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI4606KWZQ/",
        "/sequence-files/IGVFFI9778ISFP/",
        "/sequence-files/IGVFFI9026YNOD/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/100f06c6-83a7-4b4d-9dfd-053a1829773b/",
        "title": "Benjamin Doughty"
    },
    "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin6hrs-Rep1-S4.rna.yaml.gz",
    "summary": "seqspec of IGVFFI4606KWZQ, IGVFFI9778ISFP, IGVFFI9026YNOD",
    "upload_status": "validated",
    "uuid": "3e0632c6-17f3-42e5-aeb0-4619382c01b2"
}