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IGVFDS9490WNXZ

released
Aliases
charles-gersbach:analysis-set-bulk-atac-DEanalysis
File Set Type
principal analysis
Summary
ATAC-seq: alignments, fold change over control, peak quantifications
Workflows
Samples
Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 28 day(s) post change, antagonized with 4 μM GSK3 inhibition for 7 days
Protocols
Attribution
Charles Gersbach, Duke

Files

8 items
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
3.3 GB
filtered
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
3.0 GB
filtered
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
1.9 GB
filtered
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
1.3 GB
filtered
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
3.5 GB
filtered
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
5.0 GB
filtered
validated
csv
fold change over control
GRCh38 fold change over control
Charles Gersbach, Duke
4.9 MB
validated
tsv
peak quantifications
GRCh38 peak quantifications
Charles Gersbach, Duke
4.3 MB
validated

File Association Graph

IGVFDS7128QRSY2 filesexperimental data2 filesIGVFFI4523VJXBbamalignmentsIGVFFI9763CJKGtsvpeak quantificationsIGVFFI7417ASXNcsvfold change over controlIGVFDS3147NUPL2 filesexperimental data2 filesIGVFFI2631HESVbamalignmentsIGVFDS8881TVYW2 filesexperimental data2 filesIGVFFI4382XXOKbamalignmentsIGVFDS7875RFFR2 filesexperimental data2 filesIGVFFI3796FCTLbamalignmentsIGVFDS9961QTUB2 filesexperimental data2 filesIGVFFI2179LWNBbamalignmentsIGVFDS5576TGNS2 filesexperimental data2 filesIGVFFI1534IVYMbamalignments
File Set
File
AnalysisSet
MeasurementSet

Samples

6 items
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days treated with 4 μM GSK3 inhibition for 7 days
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days treated with 4 μM GSK3 inhibition for 7 days
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days treated with 4 μM GSK3 inhibition for 7 days
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

MeasurementSet Input File Sets

6 items
Controls
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days treated with 4 μM GSK3 inhibition for 7 days
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days treated with 4 μM GSK3 inhibition for 7 days
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days treated with 4 μM GSK3 inhibition for 7 days
untreated ATAC-seq
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days
untreated ATAC-seq
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days
untreated ATAC-seq
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days