IGVFDS9490WNXZ

released

Aliases

charles-gersbach:analysis-set-bulk-atac-DEanalysis

File Set Type

principal analysis

Summary

ATAC-seq: alignments, fold change over control, peak quantifications

Workflows

Gersbach GGR ATAC-seq Pipeline (IGVFWF6411VZLF)

Samples

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, antagonized with treatment(s)

Protocols

https://www.protocols.io/view/atac-seq-for-human-ipsc-cm-following-gsk3-inhibiti-5qpvokj27l4o

Files

8 items

IGVFFI1534IVYM

bam

alignments

GRCh38 filtered alignments

Charles Gersbach, Duke

3.3 GB

filtered

validated

IGVFFI2179LWNB

bam

alignments

GRCh38 filtered alignments

Charles Gersbach, Duke

3.0 GB

filtered

validated

IGVFFI2631HESV

bam

alignments

GRCh38 filtered alignments

Charles Gersbach, Duke

1.9 GB

filtered

validated

IGVFFI3796FCTL

bam

alignments

GRCh38 filtered alignments

Charles Gersbach, Duke

1.3 GB

filtered

validated

IGVFFI4382XXOK

bam

alignments

GRCh38 filtered alignments

Charles Gersbach, Duke

3.5 GB

filtered

validated

IGVFFI4523VJXB

bam

alignments

GRCh38 filtered alignments

Charles Gersbach, Duke

5.0 GB

filtered

validated

IGVFFI7417ASXN

csv

fold change over control

GRCh38 fold change over control

Charles Gersbach, Duke

4.9 MB

validated

IGVFFI9763CJKG

tsv

peak quantifications

GRCh38 peak quantifications

Charles Gersbach, Duke

4.3 MB

validated

File Association Graph

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File Set

File

AnalysisSet

MeasurementSet

Samples

6 items

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM4983MYZQ

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens

IGVFSM5361EAGX

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days

IGVFSM6698FQIG

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days

IGVFSM7187NNQU

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens

IGVFSM9172PRNN

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days

IGVFSM9739CNEQ

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens

Donors

1 item

Accession

Aliases

Sex

Taxa

IGVFDO1756PPKO

igvf:donor_of_WTC11

male

Homo sapiens

MeasurementSet Input File Sets
Show aliases columns

6 items

Controls

IGVFDS9961QTUB

ATAC-seq

IGVFSM9172PRNN

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days

IGVFDS7875RFFR

IGVFDS5576TGNS

ATAC-seq

IGVFSM6698FQIG

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days

IGVFDS3147NUPL

IGVFDS7875RFFR

ATAC-seq

IGVFSM7187NNQU

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens

IGVFDS3147NUPL

ATAC-seq

IGVFSM9739CNEQ

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens

IGVFDS7128QRSY

ATAC-seq

IGVFSM4983MYZQ

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens

IGVFDS8881TVYW

ATAC-seq

IGVFSM5361EAGX

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days

IGVFDS7128QRSY