{
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{
"category": "missing age",
"detail": "Primary cell [IGVFSM6537MPGY](/primary-cells/IGVFSM6537MPGY/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
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},
{
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"path": "/primary-cells/IGVFSM1498WFCO/"
},
{
"category": "missing age",
"detail": "Primary cell [IGVFSM0383IKGE](/primary-cells/IGVFSM0383IKGE/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
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"path": "/primary-cells/IGVFSM0383IKGE/"
}
]
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"title": "High-Throughput Functional Annotation of Gene Regulatory Elements and Variants Critical to Complex Cellular Phenotypes"
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"creation_timestamp": "2024-10-17T19:37:55.610318+00:00",
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},
{
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],
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"status": "released",
"taxa": "Homo sapiens"
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],
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"aliases": [
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"upload_status": "validated"
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"href": "/alignment-files/IGVFFI9520OPSC/@@download/IGVFFI9520OPSC.bam",
"s3_uri": "s3://igvf-files/2024/10/14/daaecaa3-d196-4428-8c8d-119219d662ad/IGVFFI9520OPSC.bam",
"submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8.rnaseq.pSM73.nt.d2.star2.Aligned.out.sorted.bam",
"upload_status": "validated"
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{
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"accession": "IGVFFI0753LZLZ",
"aliases": [
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"assembly": "GRCh38",
"content_type": "transcriptome alignments",
"creation_timestamp": "2024-10-14T20:58:21.284542+00:00",
"file_format": "bam",
"file_size": 2734955471,
"href": "/alignment-files/IGVFFI0753LZLZ/@@download/IGVFFI0753LZLZ.bam",
"s3_uri": "s3://igvf-files/2024/10/14/4dd050e0-20d5-408b-a402-c97cd5e5699c/IGVFFI0753LZLZ.bam",
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"upload_status": "validated"
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],
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"input_file_sets": [
{
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"accession": "IGVFDS4169BMPH",
"aliases": [
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],
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},
{
"@id": "/measurement-sets/IGVFDS6088VPGO/",
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"aliases": [
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{
"@id": "/measurement-sets/IGVFDS9846EQXV/",
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"/analysis-sets/IGVFDS9906UGWB/"
],
"lab": {
"@id": "/labs/charles-gersbach/",
"title": "Charles Gersbach, Duke"
},
"protocols": [
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"https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6"
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{
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"publication_identifiers": [
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]
}
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"release_timestamp": "2024-10-25T04:18:35.773662+00:00",
"sample_summary": "CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library",
"samples": [
{
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"Sample",
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],
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"aliases": [
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"classifications": [
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"construct_library_sets": [
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],
"modifications": [
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"modality": "knockout"
}
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{
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"status": "released",
"summary": "CD8-positive, alpha-beta memory T cell",
"term_name": "CD8-positive, alpha-beta memory T cell"
}
],
"status": "released",
"summary": "CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)",
"taxa": "Homo sapiens"
},
{
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"Sample",
"Item"
],
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"aliases": [
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],
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],
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"Item"
],
"status": "released",
"summary": "CD8-positive, alpha-beta memory T cell",
"term_name": "CD8-positive, alpha-beta memory T cell"
}
],
"status": "released",
"summary": "CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)",
"taxa": "Homo sapiens"
},
{
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],
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],
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"taxa": "Homo sapiens"
}
],
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"title": "Alejandro Barrera"
},
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"summary": "knockout RNA-seq: transcriptome alignments",
"uuid": "b8fbe5f7-2d40-453c-9c81-f4b616dab9ef",
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}