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IGVFDS4883TFKC

released
Aliases
ali-mortazavi:IGVF_B01_LeftCortex
File Set Type
principal analysis
Summary
Parse SPLiT-seq
Description
Lab processed snRNA-seq gene counts with clusters and cell type annotations for IGVF C57BL/6J and Castaneus left cortex bridge samples
Samples
Mus musculus multiplexed sample of left cerebral cortex, cellular sub pool(s): B01_13A, B01_13B, B01_13C, B01_13D, B01_13E, B01_13F, B01_13G, B01_13H
Attribution
Ali Mortazavi, UCI

Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Workflow
Uniform Pipeline
Upload Status
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
7.1 GB
validated

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File Set
File
AnalysisSet

Samples

8 items
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Mus musculus CAST/EiJ (female, 72 days) left cerebral cortex tissue; Mus musculus C57BL/6J (male, 72 days) left cerebral cortex tissue; ... and 6 more samples
MultiplexedSample
multiplexed sample: Mus musculus CAST/EiJ (female, 72 days) left cerebral cortex tissue; Mus musculus C57BL/6J (male, 72 days) left cerebral cortex tissue; ... and 6 more samples
MultiplexedSample
multiplexed sample: Mus musculus CAST/EiJ (female, 72 days) left cerebral cortex tissue; Mus musculus C57BL/6J (male, 72 days) left cerebral cortex tissue; ... and 6 more samples
MultiplexedSample
multiplexed sample: Mus musculus CAST/EiJ (female, 72 days) left cerebral cortex tissue; Mus musculus C57BL/6J (male, 72 days) left cerebral cortex tissue; ... and 6 more samples
MultiplexedSample
multiplexed sample: Mus musculus CAST/EiJ (female, 72 days) left cerebral cortex tissue; Mus musculus C57BL/6J (male, 72 days) left cerebral cortex tissue; ... and 6 more samples
MultiplexedSample
multiplexed sample: Mus musculus CAST/EiJ (female, 72 days) left cerebral cortex tissue; Mus musculus C57BL/6J (male, 72 days) left cerebral cortex tissue; ... and 6 more samples
MultiplexedSample
multiplexed sample: Mus musculus CAST/EiJ (female, 72 days) left cerebral cortex tissue; Mus musculus C57BL/6J (male, 72 days) left cerebral cortex tissue; ... and 6 more samples
MultiplexedSample
multiplexed sample: Mus musculus CAST/EiJ (female, 72 days) left cerebral cortex tissue; Mus musculus C57BL/6J (male, 72 days) left cerebral cortex tissue; ... and 6 more samples

Donors

8 items
Aliases
  • ali-mortazavi:108_CASTJ_10F
female
Mus musculus
  • ali-mortazavi:105_CASTJ_10M
male
Mus musculus
  • ali-mortazavi:119_B6J_10M
male
Mus musculus
  • ali-mortazavi:107_CASTJ_10M
male
Mus musculus
  • ali-mortazavi:117_B6J_10M
male
Mus musculus
  • ali-mortazavi:118_B6J_10F
female
Mus musculus
  • ali-mortazavi:106_CASTJ_10F
female
Mus musculus
  • ali-mortazavi:120_B6J_10F
female
Mus musculus

AnalysisSet Input File Sets

8 items
Parse SPLiT-seq
Parse SPLiT-seq
Parse SPLiT-seq
Parse SPLiT-seq
Parse SPLiT-seq
Parse SPLiT-seq
Parse SPLiT-seq
Parse SPLiT-seq

Documents

1 item
Page
Description
Type
Download
Standardized File Format
Preview
UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_LeftCortex
plate map