IGVFDS4883TFKC

released
{
    "@context": "/terms/",
    "@id": "/analysis-sets/IGVFDS4883TFKC/",
    "@type": [
        "AnalysisSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS4883TFKC",
    "aliases": [
        "ali-mortazavi:IGVF_B01_LeftCortex"
    ],
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "NTR term ID",
                "detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_ntr_term_id",
                "path": "/sample-terms/NTR_0000646/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping",
        "contact_pi": {
            "@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
            "title": "Ali Mortazavi"
        },
        "title": "Center for Mouse Genomic Variation at Single Cell Resolution"
    },
    "control_for": [],
    "creation_timestamp": "2024-09-03T23:27:47.747055+00:00",
    "description": "Lab processed snRNA-seq gene counts with clusters and cell type annotations for IGVF C57BL/6J and Castaneus left cortex bridge samples",
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        "/documents/49860adc-0f7d-4373-85dc-52604fcbbb1a/"
    ],
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            "sex": "female",
            "status": "released",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/rodent-donors/IGVFDO6942KQBN/",
            "accession": "IGVFDO6942KQBN",
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            ],
            "sex": "male",
            "status": "released",
            "taxa": "Mus musculus"
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            "@id": "/rodent-donors/IGVFDO1486RZJK/",
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            "sex": "male",
            "status": "released",
            "taxa": "Mus musculus"
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            "@id": "/rodent-donors/IGVFDO8652OFEQ/",
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            "status": "released",
            "taxa": "Mus musculus"
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            "@id": "/rodent-donors/IGVFDO0493VGMC/",
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            "sex": "female",
            "status": "released",
            "taxa": "Mus musculus"
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            "@id": "/rodent-donors/IGVFDO4816HOFW/",
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            ],
            "sex": "male",
            "status": "released",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/rodent-donors/IGVFDO9333ACQP/",
            "accession": "IGVFDO9333ACQP",
            "aliases": [
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            ],
            "sex": "female",
            "status": "released",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/rodent-donors/IGVFDO3261YWHI/",
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                "ali-mortazavi:119_B6J_10M"
            ],
            "sex": "male",
            "status": "released",
            "taxa": "Mus musculus"
        }
    ],
    "file_set_type": "principal analysis",
    "files": [
        {
            "@id": "/matrix-files/IGVFFI5345SNRS/",
            "accession": "IGVFFI5345SNRS",
            "aliases": [
                "ali-mortazavi:IGVF_B01_LeftCortex_anndata"
            ],
            "content_type": "sparse gene count matrix",
            "creation_timestamp": "2024-09-03T23:40:57.043264+00:00",
            "file_format": "h5ad",
            "file_size": 7066756745,
            "href": "/matrix-files/IGVFFI5345SNRS/@@download/IGVFFI5345SNRS.h5ad",
            "s3_uri": "s3://igvf-files/2024/09/03/60005c1e-96ac-4e2a-ae69-021e93a72106/IGVFFI5345SNRS.h5ad",
            "submitted_file_name": "IGVFB01_LeftCortex_annotated_adata.h5ad",
            "upload_status": "validated"
        }
    ],
    "input_file_set_for": [],
    "input_file_sets": [
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            "@id": "/analysis-sets/IGVFDS9520PLLU/",
            "accession": "IGVFDS9520PLLU",
            "aliases": [
                "ali-mortazavi:IGVF_B01_subpool_1"
            ],
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        },
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            "@id": "/analysis-sets/IGVFDS7323SUVK/",
            "accession": "IGVFDS7323SUVK",
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                "ali-mortazavi:IGVF_B01_subpool_2"
            ],
            "file_set_type": "intermediate analysis"
        },
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            "@id": "/analysis-sets/IGVFDS0223KLTB/",
            "accession": "IGVFDS0223KLTB",
            "aliases": [
                "ali-mortazavi:IGVF_B01_subpool_3"
            ],
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        },
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            "@id": "/analysis-sets/IGVFDS2413FYLA/",
            "accession": "IGVFDS2413FYLA",
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                "ali-mortazavi:IGVF_B01_subpool_4"
            ],
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        },
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            "@id": "/analysis-sets/IGVFDS2762DTQI/",
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                "ali-mortazavi:IGVF_B01_subpool_5"
            ],
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        },
        {
            "@id": "/analysis-sets/IGVFDS3636WTST/",
            "accession": "IGVFDS3636WTST",
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                "ali-mortazavi:IGVF_B01_subpool_6"
            ],
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        },
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            "accession": "IGVFDS5115IZVN",
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    ],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "protocols": [],
    "release_timestamp": "2024-09-05T18:27:41.473484+00:00",
    "samples": [
        {
            "@id": "/tissues/IGVFSM7772DGMA/",
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                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
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                "ali-mortazavi:118_B6J_10F_21_NTR_0000646"
            ],
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                "tissue"
            ],
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                {
                    "@id": "/sample-terms/NTR_0000646/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "released",
                    "summary": "left cerebral cortex",
                    "term_name": "left cerebral cortex"
                }
            ],
            "status": "released",
            "summary": "left cerebral cortex tissue, female, Mus musculus B6J (72 days)",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/tissues/IGVFSM2279TQMZ/",
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                "Sample",
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            "accession": "IGVFSM2279TQMZ",
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                "ali-mortazavi:117_B6J_10M_21_NTR_0000646"
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                    ],
                    "status": "released",
                    "summary": "left cerebral cortex",
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                }
            ],
            "status": "released",
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            "taxa": "Mus musculus"
        },
        {
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                    ],
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                }
            ],
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            "summary": "left cerebral cortex tissue, female, Mus musculus CASTJ (72 days)",
            "taxa": "Mus musculus"
        },
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                        "Item"
                    ],
                    "status": "released",
                    "summary": "left cerebral cortex",
                    "term_name": "left cerebral cortex"
                }
            ],
            "status": "released",
            "summary": "left cerebral cortex tissue, male, Mus musculus CASTJ (72 days)",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/tissues/IGVFSM7094ZNGP/",
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                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM7094ZNGP",
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            ],
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            ],
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                    "@type": [
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                        "Item"
                    ],
                    "status": "released",
                    "summary": "left cerebral cortex",
                    "term_name": "left cerebral cortex"
                }
            ],
            "status": "released",
            "summary": "left cerebral cortex tissue, female, Mus musculus B6J (72 days)",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/tissues/IGVFSM5782OIYL/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM5782OIYL",
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                "ali-mortazavi:119_B6J_10M_21_NTR_0000646"
            ],
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                "tissue"
            ],
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                {
                    "@id": "/sample-terms/NTR_0000646/",
                    "@type": [
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                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "released",
                    "summary": "left cerebral cortex",
                    "term_name": "left cerebral cortex"
                }
            ],
            "status": "released",
            "summary": "left cerebral cortex tissue, male, Mus musculus B6J (72 days)",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/tissues/IGVFSM0447EABS/",
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                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM0447EABS",
            "aliases": [
                "ali-mortazavi:108_CASTJ_10F_21_NTR_0000646"
            ],
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            ],
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                {
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                    "@type": [
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                    ],
                    "status": "released",
                    "summary": "left cerebral cortex",
                    "term_name": "left cerebral cortex"
                }
            ],
            "status": "released",
            "summary": "left cerebral cortex tissue, female, Mus musculus CASTJ (72 days)",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/tissues/IGVFSM5157GFSA/",
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                "Sample",
                "Item"
            ],
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                "ali-mortazavi:107_CASTJ_10M_21_NTR_0000646"
            ],
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                    "@id": "/sample-terms/NTR_0000646/",
                    "@type": [
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                        "Item"
                    ],
                    "status": "released",
                    "summary": "left cerebral cortex",
                    "term_name": "left cerebral cortex"
                }
            ],
            "status": "released",
            "summary": "left cerebral cortex tissue, male, Mus musculus CASTJ (72 days)",
            "taxa": "Mus musculus"
        }
    ],
    "schema_version": "8",
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_files_timestamp": "2024-09-03T23:40:57.043264+00:00",
    "summary": "principal analysis of Parse SPLiT-seq data",
    "uuid": "a036861e-a44b-44e8-a904-138f3b8af431"
}