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IGVFDS4614CBLH

released
Aliases
charles-gersbach:analysis-set-crispra-region3-1umET1-ipsc-cm-targeted-hicar-rep3-cool
File Set Type
intermediate analysis
Summary
HiCAR: contact matrix
Workflows
Samples
Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, perturbed with 1 μM Endothelin-1 for 3 days, transfected with a guide library
Protocols
Attribution
Charles Gersbach, Duke

Files

2 items
mcool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
29 MB
validated
cool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
6.5 MB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
guide (sgRNA) library targeting accessible genome regions in a genomic locus

MeasurementSet Input File Sets

1 item
Measurement Sets
Measured Samples
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library

File Sets Using This Analysis Set as an Input

2 items
AnalysisSet
HiCAR: bin paired count, differential chromatin contact quantifications
  • charles-gersbach:analysis-set-crispra-stim-NT-region3-DEanalysis
Charles Gersbach, Duke
AnalysisSet
HiCAR: bin paired count, differential chromatin contact quantifications
  • charles-gersbach:analysis-set-crispra-stim-ctrl-region3-DEanalysis
Charles Gersbach, Duke