IGVFDS4614CBLH

released
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    "@id": "/analysis-sets/IGVFDS4614CBLH/",
    "@type": [
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        "FileSet",
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    "accession": "IGVFDS4614CBLH",
    "aliases": [
        "charles-gersbach:analysis-set-crispra-region3-1umET1-ipsc-cm-targeted-hicar-rep3-cool"
    ],
    "assay_titles": [
        "HiCAR"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012053/",
        "component": "functional characterization",
        "contact_pi": {
            "@id": "/users/5d329c0e-3ea9-49bf-9bb9-844a53a882c0/",
            "title": "Charles Gersbach"
        },
        "title": "High-Throughput Functional Annotation of Gene Regulatory Elements and Variants Critical to Complex Cellular Phenotypes"
    },
    "control_for": [],
    "creation_timestamp": "2024-11-07T15:46:45.431180+00:00",
    "donors": [
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            "accession": "IGVFDO3212TBUN",
            "aliases": [
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            ],
            "sex": "male",
            "status": "released",
            "taxa": "Homo sapiens"
        }
    ],
    "file_set_type": "intermediate analysis",
    "files": [
        {
            "@id": "/matrix-files/IGVFFI3234DYPN/",
            "accession": "IGVFFI3234DYPN",
            "aliases": [
                "charles-gersbach:matrix-file-crispra-region3-1umET1-ipsc-cm-targeted-hicar-rep3-mcool"
            ],
            "content_type": "contact matrix",
            "creation_timestamp": "2024-11-07T16:07:21.303293+00:00",
            "file_format": "mcool",
            "file_size": 28528288,
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            "s3_uri": "s3://igvf-files/2024/11/07/b58fcc05-0d84-4a96-9e26-1a30ba02bd51/IGVFFI3234DYPN.mcool",
            "status": "released",
            "submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/cooler/human/VP64_TA448_3_stim.1000.mcool",
            "upload_status": "validated"
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            "aliases": [
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            "content_type": "contact matrix",
            "creation_timestamp": "2024-11-07T16:07:19.772644+00:00",
            "file_format": "cool",
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            "status": "released",
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            "upload_status": "validated"
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    "functional_assay_mechanisms": [],
    "input_file_sets": [
        {
            "@id": "/measurement-sets/IGVFDS8492FFIO/",
            "accession": "IGVFDS8492FFIO",
            "aliases": [
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            "file_set_type": "experimental data",
            "status": "released"
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        "/analysis-sets/IGVFDS7797WATU/"
    ],
    "lab": {
        "@id": "/labs/charles-gersbach/",
        "title": "Charles Gersbach, Duke"
    },
    "protocols": [
        "https://www.protocols.io/view/hicar-for-human-ipsc-cm-following-enhancer-perturb-3byl49mdrgo5"
    ],
    "release_timestamp": "2024-12-13T19:43:52.565433+00:00",
    "sample_summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library",
    "samples": [
        {
            "@id": "/in-vitro-systems/IGVFSM7610LWOV/",
            "@type": [
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                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM7610LWOV",
            "aliases": [
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            ],
            "classifications": [
                "differentiated cell specimen"
            ],
            "construct_library_sets": [
                "/construct-library-sets/IGVFDS5972DQKC/"
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "@type": [
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                        "OntologyTerm",
                        "Item"
                    ],
                    "aliases": [
                        "igvf:WTC11"
                    ],
                    "status": "released",
                    "summary": "GM25256 (WTC-11)",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library",
            "targeted_sample_term": {
                "@id": "/sample-terms/CL_0000746/",
                "status": "released",
                "term_name": "cardiac muscle cell"
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            "taxa": "Homo sapiens",
            "treatments": [
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                    "@id": "/treatments/bbe5df8d-a9e2-4a99-8942-9b3b7d12c605/",
                    "status": "released",
                    "treatment_term_name": "Endothelin-1"
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    "schema_version": "9",
    "status": "released",
    "submitted_by": {
        "@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
        "title": "Ruhi Rai"
    },
    "submitted_files_timestamp": "2024-11-07T16:07:19.772644+00:00",
    "summary": "HiCAR: contact matrix",
    "uuid": "b3834a26-77a9-4270-b3e5-d0192a3a1fb5",
    "workflows": [
        {
            "@id": "/workflows/IGVFWF1709OHTV/",
            "accession": "IGVFWF1709OHTV",
            "name": "nf-core HiCAR Pipeline",
            "status": "released",
            "uniform_pipeline": false
        }
    ]
}