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IGVFDS2774OLAH

released
Aliases
jay-shendure:analysis_set_scQers_mEBs
File Set Type
principal analysis
Summary
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Publications
Samples
Mus musculus mouse embryonic stem differentiated cell specimen induced to embryoid body, at 21 day(s) post change, transfected with a reporter library, cellular sub pool(s): 10Xlane1, 10Xlane2
Protocols
Attribution
Jay Shendure, UW

Files

2 items
tsv
element quantifications
element quantifications
Jay Shendure, UW
23 MB
validated
tsv
element quantifications
element quantifications
Jay Shendure, UW
18 MB
validated

File Association Graph

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File Set
File
AnalysisSet
AuxiliarySet
CuratedSet
MeasurementSet

Samples

6 items
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library
InVitroSystem
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • jay-shendure:WD44_donor
male
Mus musculus

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting accessible genome regions in many genomic loci

MeasurementSet Input File Sets

6 items
Associated Auxiliary Sets
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library

AuxiliarySet Input File Sets

12 items
Associated Measurement Sets
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1) transfected with a reporter library
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2) transfected with a reporter library

CuratedSet Input File Sets

1 item
Accession
Summary
Mus musculus elements