{
"@context": "/terms/",
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"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2774OLAH",
"aliases": [
"jay-shendure:analysis_set_scQers_mEBs"
],
"assay_titles": [
"MPRA (scQer)"
],
"audit": {
"NOT_COMPLIANT": [
{
"category": "missing file format specifications",
"detail": "Tabular file [IGVFFI2410QRVN](/tabular-files/IGVFFI2410QRVN/) has no `file_format_specifications`. Tabular files are expected to link to a file format specifications document describing the headers of the file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_tabular_file_no_file_format_specifications",
"path": "/tabular-files/IGVFFI2410QRVN/"
}
],
"WARNING": [
{
"category": "missing analysis step version",
"detail": "Analysis set [IGVFDS2774OLAH](/analysis-sets/IGVFDS2774OLAH/) links to file(s) [IGVFFI2410QRVN](/tabular-files/IGVFFI2410QRVN/) that are missing `analysis_step_version`. Analysis set files are expected to specify analysis step version.",
"level": 40,
"level_name": "WARNING",
"name": "audit_analysis_set_files_missing_analysis_step_version",
"path": "/analysis-sets/IGVFDS2774OLAH/"
}
]
},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization",
"contact_pi": {
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"title": "Jay Shendure"
},
"title": "Massively parallel characterization of variants and elements impacting transcriptional regulation in dynamic cellular systems"
},
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"creation_timestamp": "2023-12-12T23:07:37.491245+00:00",
"donors": [
{
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"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Mus musculus"
}
],
"file_set_type": "principal analysis",
"files": [
{
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"accession": "IGVFFI2410QRVN",
"aliases": [
"jay-shendure:tabularfile_CREs_scQers-processed_LaLanne"
],
"content_type": "element quantifications",
"creation_timestamp": "2024-05-07T19:52:36.459604+00:00",
"file_format": "tsv",
"file_size": 17966180,
"href": "/tabular-files/IGVFFI2410QRVN/@@download/IGVFFI2410QRVN.tsv.gz",
"s3_uri": "s3://igvf-files/2024/05/07/c81b696f-9e81-4c58-8e59-64ce9894c005/IGVFFI2410QRVN.txt.gz",
"submitted_file_name": "/net/shendure/vol10/projects/JBL/IGVF_for_Beth_nobackup/assigned_oBC_CRE_mBC_joined_counts_sc_rep_mEB_series.txt.gz",
"upload_status": "validated"
}
],
"functional_assay_mechanisms": [],
"input_file_sets": [
{
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"aliases": [
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],
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},
{
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},
{
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},
{
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],
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},
{
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},
{
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},
{
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},
{
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],
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},
{
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},
{
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],
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},
{
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},
{
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{
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{
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},
{
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],
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},
{
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],
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{
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"input_for": [],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
"notes": "This object's file_set_type was primary analysis and has been updated to be principal analysis.",
"protocols": [
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],
"publications": [
{
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"publication_identifiers": [
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"PMID:38724692"
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}
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{
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{
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{
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],
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],
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},
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"summary": "MPRA (scQer): element quantifications",
"uuid": "85b28f63-a08e-495e-b610-5a2068e600a6",
"workflows": []
}