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IGVFDS2622CKLA

released
Aliases
jay-shendure:analysis_set_scQers_mEBs_bulk
File Set Type
principal analysis
Summary
MPRA: element quantifications
Workflows
Publications
Samples
mouse embryonic stem cell differentiated cell specimen induced to embryoid body, at 12 time point(s) post change, transfected with a reporter library
Protocols

Files

2 items
tsv
element quantifications
element quantifications
Jay Shendure, UW
16 MB
validated
tsv
element quantifications
element quantifications
Jay Shendure, UW
17 MB
validated

File Association Graph

Graph too large to display

Samples

38 items
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 8 days, male, Mus musculus WD44 transfected with a reporter library
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 6 days, male, Mus musculus WD44 transfected with a reporter library
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days, male, Mus musculus WD44 transfected with a reporter library
InVitroSystem
mouse embryonic stem differentiated cell specimen, male, Mus musculus WD44 transfected with a reporter library
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 20 days, male, Mus musculus WD44 transfected with a reporter library
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 18 days, male, Mus musculus WD44 transfected with a reporter library
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 20 days, male, Mus musculus WD44 transfected with a reporter library
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days, male, Mus musculus WD44 transfected with a reporter library
InVitroSystem
mouse embryonic stem differentiated cell specimen, male, Mus musculus WD44 transfected with a reporter library
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days, male, Mus musculus WD44 transfected with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • jay-shendure:WD44_donor
male
Mus musculus

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting accessible genome regions in many genomic loci

MeasurementSet Input File Sets

38 items
Associated Auxiliary Sets
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 14 days, male, Mus musculus WD44 transfected with a reporter library
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen, male, Mus musculus WD44 transfected with a reporter library
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 10 days, male, Mus musculus WD44 transfected with a reporter library
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days, male, Mus musculus WD44 transfected with a reporter library
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days, male, Mus musculus WD44 transfected with a reporter library
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 18 days, male, Mus musculus WD44 transfected with a reporter library
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 20 days, male, Mus musculus WD44 transfected with a reporter library
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 18 days, male, Mus musculus WD44 transfected with a reporter library
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days, male, Mus musculus WD44 transfected with a reporter library
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 18 days, male, Mus musculus WD44 transfected with a reporter library

AuxiliarySet Input File Sets

38 items
Associated Measurement Sets
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days, male, Mus musculus WD44 transfected with a reporter library
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days, male, Mus musculus WD44 transfected with a reporter library
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days, male, Mus musculus WD44 transfected with a reporter library
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 14 days, male, Mus musculus WD44 transfected with a reporter library
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days, male, Mus musculus WD44 transfected with a reporter library
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen, male, Mus musculus WD44 transfected with a reporter library
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 8 days, male, Mus musculus WD44 transfected with a reporter library
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days, male, Mus musculus WD44 transfected with a reporter library
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 6 days, male, Mus musculus WD44 transfected with a reporter library
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
mouse embryonic stem differentiated cell specimen induced to embryoid body for 8 days, male, Mus musculus WD44 transfected with a reporter library

CuratedSet Input File Sets

1 item
Accession
Summary
Mus musculus elements

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW