IGVFDS2622CKLA

1{
2    "@context": "/terms/",
3    "@id": "/analysis-sets/IGVFDS2622CKLA/",
4    "@type": [
5        "AnalysisSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS2622CKLA",
10    "aliases": [
11        "jay-shendure:analysis_set_scQers_mEBs_bulk"
12    ],
13    "assay_titles": [
14        "MPRA"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011966/",
19        "component": "functional characterization",
20        "contact_pi": {
21            "@id": "/users/eb543cda-67b7-493c-84eb-187d0dac13ba/",
22            "title": "Jay Shendure"
23        },
24        "title": "Massively parallel characterization of variants and elements impacting transcriptional regulation in dynamic cellular systems"
25    },
26    "construct_library_sets": [
27        {
28            "@id": "/construct-library-sets/IGVFDS7655GRFI/",
29            "accession": "IGVFDS7655GRFI",
30            "file_set_type": "reporter library",
31            "integrated_content_files": [
32                {
33                    "@id": "/tabular-files/IGVFFI8904VCYX/",
34                    "accession": "IGVFFI8904VCYX",
35                    "content_type": "MPRA sequence designs",
36                    "status": "released",
37                    "summary": "MPRA sequence designs"
38                }
39            ],
40            "status": "released",
41            "summary": "reporter library targeting accessible genome regions in many genomic loci"
42        }
43    ],
44    "control_for": [],
45    "creation_timestamp": "2023-12-12T23:07:38.631554+00:00",
46    "donors": [
47        {
48            "@id": "/rodent-donors/IGVFDO3898MNLZ/",
49            "accession": "IGVFDO3898MNLZ",
50            "aliases": [
51                "jay-shendure:WD44_donor"
52            ],
53            "sex": "male",
54            "status": "released",
55            "strain_background": "C57BL/6J (B6)",
56            "taxa": "Mus musculus"
57        }
58    ],
59    "file_set_type": "principal analysis",
60    "files": [
61        {
62            "@id": "/tabular-files/IGVFFI0292XWJM/",
63            "accession": "IGVFFI0292XWJM",
64            "aliases": [
65                "jay-shendure:tabularfile_CREs_bulkMPRA-counts_LaLanne"
66            ],
67            "content_type": "element quantifications",
68            "controlled_access": false,
69            "creation_timestamp": "2024-05-07T19:59:38.674958+00:00",
70            "file_format": "tsv",
71            "file_size": 15792452,
72            "href": "/tabular-files/IGVFFI0292XWJM/@@download/IGVFFI0292XWJM.tsv.gz",
73            "s3_uri": "s3://igvf-files/2024/05/07/caa494e1-8ba0-4186-97a1-3a88a6cd8f34/IGVFFI0292XWJM.txt.gz",
74            "status": "revoked",
75            "submitted_file_name": "/net/shendure/vol10/projects/JBL/IGVF_for_Beth_nobackup/bulk_MPRA_counts_mEB_series.txt.gz",
76            "upload_status": "validated"
77        },
78        {
79            "@id": "/tabular-files/IGVFFI4223UWJR/",
80            "accession": "IGVFFI4223UWJR",
81            "aliases": [
82                "jay-shendure:tabularfile_CREs_bulkMPRA-counts_withcoords_LaLanne"
83            ],
84            "content_type": "element quantifications",
85            "controlled_access": false,
86            "creation_timestamp": "2024-11-25T18:16:27.386992+00:00",
87            "file_format": "tsv",
88            "file_size": 17057574,
89            "href": "/tabular-files/IGVFFI4223UWJR/@@download/IGVFFI4223UWJR.tsv.gz",
90            "s3_uri": "s3://igvf-files/2024/11/25/193981c9-9639-45b0-aad4-a2c4eb367c80/IGVFFI4223UWJR.tsv.gz",
91            "status": "released",
92            "submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_scATAC_EB_correction_nobackup/bulk_MPRA_counts_mEB_series_w_mm39_coord_20241119.tsv.gz",
93            "upload_status": "validated"
94        }
95    ],
96    "functional_assay_mechanisms": [],
97    "input_file_sets": [
98        {
99            "@id": "/curated-sets/IGVFDS0238EDXB/",
100            "accession": "IGVFDS0238EDXB",
101            "aliases": [
102                "jay-shendure:curatedset_CREs_LaLanne"
103            ],
104            "file_set_type": "elements",
105            "status": "released"
106        },
107        {
108            "@id": "/auxiliary-sets/IGVFDS1491XCOB/",
109            "accession": "IGVFDS1491XCOB",
110            "aliases": [
111                "jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day0_reads"
112            ],
113            "file_set_type": "quantification DNA barcode sequencing",
114            "status": "released"
115        },
116        {
117            "@id": "/auxiliary-sets/IGVFDS2513FWFN/",
118            "accession": "IGVFDS2513FWFN",
119            "aliases": [
120                "jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day2_reads"
121            ],
122            "file_set_type": "quantification DNA barcode sequencing",
123            "status": "released"
124        },
125        {
126            "@id": "/auxiliary-sets/IGVFDS9987GJPC/",
127            "accession": "IGVFDS9987GJPC",
128            "aliases": [
129                "jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day4_reads"
130            ],
131            "file_set_type": "quantification DNA barcode sequencing",
132            "status": "released"
133        },
134        {
135            "@id": "/auxiliary-sets/IGVFDS3729YOSL/",
136            "accession": "IGVFDS3729YOSL",
137            "aliases": [
138                "jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day6_reads"
139            ],
140            "file_set_type": "quantification DNA barcode sequencing",
141            "status": "released"
142        },
143        {
144            "@id": "/auxiliary-sets/IGVFDS1683YYFI/",
145            "accession": "IGVFDS1683YYFI",
146            "aliases": [
147                "jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day8_reads"
148            ],
149            "file_set_type": "quantification DNA barcode sequencing",
150            "status": "released"
151        },
152        {
153            "@id": "/auxiliary-sets/IGVFDS0774ETMA/",
154            "accession": "IGVFDS0774ETMA",
155            "aliases": [
156                "jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day10_reads"
157            ],
158            "file_set_type": "quantification DNA barcode sequencing",
159            "status": "released"
160        },
161        {
162            "@id": "/auxiliary-sets/IGVFDS7059CWBY/",
163            "accession": "IGVFDS7059CWBY",
164            "aliases": [
165                "jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day12_reads"
166            ],
167            "file_set_type": "quantification DNA barcode sequencing",
168            "status": "released"
169        },
170        {
171            "@id": "/auxiliary-sets/IGVFDS1064LHGI/",
172            "accession": "IGVFDS1064LHGI",
173            "aliases": [
174                "jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day14_reads"
175            ],
176            "file_set_type": "quantification DNA barcode sequencing",
177            "status": "released"
178        },
179        {
180            "@id": "/auxiliary-sets/IGVFDS8347TPDV/",
181            "accession": "IGVFDS8347TPDV",
182            "aliases": [
183                "jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day16_reads"
184            ],
185            "file_set_type": "quantification DNA barcode sequencing",
186            "status": "released"
187        },
188        {
189            "@id": "/auxiliary-sets/IGVFDS4928ZASL/",
190            "accession": "IGVFDS4928ZASL",
191            "aliases": [
192                "jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day18_reads"
193            ],
194            "file_set_type": "quantification DNA barcode sequencing",
195            "status": "released"
196        },
197        {
198            "@id": "/auxiliary-sets/IGVFDS0034QRTM/",
199            "accession": "IGVFDS0034QRTM",
200            "aliases": [
201                "jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day20_reads"
202            ],
203            "file_set_type": "quantification DNA barcode sequencing",
204            "status": "released"
205        },
206        {
207            "@id": "/auxiliary-sets/IGVFDS0085UXQX/",
208            "accession": "IGVFDS0085UXQX",
209            "aliases": [
210                "jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day21_reads"
211            ],
212            "file_set_type": "quantification DNA barcode sequencing",
213            "status": "released"
214        },
215        {
216            "@id": "/auxiliary-sets/IGVFDS1266BCGD/",
217            "accession": "IGVFDS1266BCGD",
218            "aliases": [
219                "jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day0_reads"
220            ],
221            "file_set_type": "quantification DNA barcode sequencing",
222            "status": "released"
223        },
224        {
225            "@id": "/auxiliary-sets/IGVFDS2885IUWV/",
226            "accession": "IGVFDS2885IUWV",
227            "aliases": [
228                "jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day2_reads"
229            ],
230            "file_set_type": "quantification DNA barcode sequencing",
231            "status": "released"
232        },
233        {
234            "@id": "/auxiliary-sets/IGVFDS8473JDSO/",
235            "accession": "IGVFDS8473JDSO",
236            "aliases": [
237                "jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day4_reads"
238            ],
239            "file_set_type": "quantification DNA barcode sequencing",
240            "status": "released"
241        },
242        {
243            "@id": "/auxiliary-sets/IGVFDS8519NOEI/",
244            "accession": "IGVFDS8519NOEI",
245            "aliases": [
246                "jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day6_reads"
247            ],
248            "file_set_type": "quantification DNA barcode sequencing",
249            "status": "released"
250        },
251        {
252            "@id": "/auxiliary-sets/IGVFDS9488YMYJ/",
253            "accession": "IGVFDS9488YMYJ",
254            "aliases": [
255                "jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day8_reads"
256            ],
257            "file_set_type": "quantification DNA barcode sequencing",
258            "status": "released"
259        },
260        {
261            "@id": "/auxiliary-sets/IGVFDS4952VFOW/",
262            "accession": "IGVFDS4952VFOW",
263            "aliases": [
264                "jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day10_reads"
265            ],
266            "file_set_type": "quantification DNA barcode sequencing",
267            "status": "released"
268        },
269        {
270            "@id": "/auxiliary-sets/IGVFDS6212LCHT/",
271            "accession": "IGVFDS6212LCHT",
272            "aliases": [
273                "jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day12_reads"
274            ],
275            "file_set_type": "quantification DNA barcode sequencing",
276            "status": "released"
277        },
278        {
279            "@id": "/auxiliary-sets/IGVFDS3480ASIH/",
280            "accession": "IGVFDS3480ASIH",
281            "aliases": [
282                "jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day14_reads"
283            ],
284            "file_set_type": "quantification DNA barcode sequencing",
285            "status": "released"
286        },
287        {
288            "@id": "/auxiliary-sets/IGVFDS2965JJYR/",
289            "accession": "IGVFDS2965JJYR",
290            "aliases": [
291                "jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day16_reads"
292            ],
293            "file_set_type": "quantification DNA barcode sequencing",
294            "status": "released"
295        },
296        {
297            "@id": "/auxiliary-sets/IGVFDS2809UYNF/",
298            "accession": "IGVFDS2809UYNF",
299            "aliases": [
300                "jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day18_reads"
301            ],
302            "file_set_type": "quantification DNA barcode sequencing",
303            "status": "released"
304        },
305        {
306            "@id": "/auxiliary-sets/IGVFDS2637WTJT/",
307            "accession": "IGVFDS2637WTJT",
308            "aliases": [
309                "jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day20_reads"
310            ],
311            "file_set_type": "quantification DNA barcode sequencing",
312            "status": "released"
313        },
314        {
315            "@id": "/auxiliary-sets/IGVFDS7145WTJW/",
316            "accession": "IGVFDS7145WTJW",
317            "aliases": [
318                "jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day21_reads"
319            ],
320            "file_set_type": "quantification DNA barcode sequencing",
321            "status": "released"
322        },
323        {
324            "@id": "/auxiliary-sets/IGVFDS6028VFBK/",
325            "accession": "IGVFDS6028VFBK",
326            "aliases": [
327                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day0_reads"
328            ],
329            "file_set_type": "quantification DNA barcode sequencing",
330            "status": "released"
331        },
332        {
333            "@id": "/auxiliary-sets/IGVFDS8746LSXO/",
334            "accession": "IGVFDS8746LSXO",
335            "aliases": [
336                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day4_reads"
337            ],
338            "file_set_type": "quantification DNA barcode sequencing",
339            "status": "released"
340        },
341        {
342            "@id": "/auxiliary-sets/IGVFDS3935KLZM/",
343            "accession": "IGVFDS3935KLZM",
344            "aliases": [
345                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day8_reads"
346            ],
347            "file_set_type": "quantification DNA barcode sequencing",
348            "status": "released"
349        },
350        {
351            "@id": "/auxiliary-sets/IGVFDS2370ZRIR/",
352            "accession": "IGVFDS2370ZRIR",
353            "aliases": [
354                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day12_reads"
355            ],
356            "file_set_type": "quantification DNA barcode sequencing",
357            "status": "released"
358        },
359        {
360            "@id": "/auxiliary-sets/IGVFDS3325YLRC/",
361            "accession": "IGVFDS3325YLRC",
362            "aliases": [
363                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day16_reads"
364            ],
365            "file_set_type": "quantification DNA barcode sequencing",
366            "status": "released"
367        },
368        {
369            "@id": "/auxiliary-sets/IGVFDS3396QFZY/",
370            "accession": "IGVFDS3396QFZY",
371            "aliases": [
372                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day18_reads"
373            ],
374            "file_set_type": "quantification DNA barcode sequencing",
375            "status": "released"
376        },
377        {
378            "@id": "/auxiliary-sets/IGVFDS2392JXXP/",
379            "accession": "IGVFDS2392JXXP",
380            "aliases": [
381                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day20_reads"
382            ],
383            "file_set_type": "quantification DNA barcode sequencing",
384            "status": "released"
385        },
386        {
387            "@id": "/auxiliary-sets/IGVFDS4218HPCH/",
388            "accession": "IGVFDS4218HPCH",
389            "aliases": [
390                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_DNA_day0_reads"
391            ],
392            "file_set_type": "quantification DNA barcode sequencing",
393            "status": "released"
394        },
395        {
396            "@id": "/auxiliary-sets/IGVFDS2989BOYC/",
397            "accession": "IGVFDS2989BOYC",
398            "aliases": [
399                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_DNA_day6_reads"
400            ],
401            "file_set_type": "quantification DNA barcode sequencing",
402            "status": "released"
403        },
404        {
405            "@id": "/auxiliary-sets/IGVFDS4286KGNY/",
406            "accession": "IGVFDS4286KGNY",
407            "aliases": [
408                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_DNA_day8_reads"
409            ],
410            "file_set_type": "quantification DNA barcode sequencing",
411            "status": "released"
412        },
413        {
414            "@id": "/auxiliary-sets/IGVFDS3255PUEZ/",
415            "accession": "IGVFDS3255PUEZ",
416            "aliases": [
417                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_DNA_day12_reads"
418            ],
419            "file_set_type": "quantification DNA barcode sequencing",
420            "status": "released"
421        },
422        {
423            "@id": "/auxiliary-sets/IGVFDS3976EEWC/",
424            "accession": "IGVFDS3976EEWC",
425            "aliases": [
426                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_DNA_day16_reads"
427            ],
428            "file_set_type": "quantification DNA barcode sequencing",
429            "status": "released"
430        },
431        {
432            "@id": "/auxiliary-sets/IGVFDS6740RMZS/",
433            "accession": "IGVFDS6740RMZS",
434            "aliases": [
435                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_DNA_day18_reads"
436            ],
437            "file_set_type": "quantification DNA barcode sequencing",
438            "status": "released"
439        },
440        {
441            "@id": "/auxiliary-sets/IGVFDS5752IJZA/",
442            "accession": "IGVFDS5752IJZA",
443            "aliases": [
444                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_DNA_day20_reads"
445            ],
446            "file_set_type": "quantification DNA barcode sequencing",
447            "status": "released"
448        },
449        {
450            "@id": "/measurement-sets/IGVFDS8101YKZJ/",
451            "accession": "IGVFDS8101YKZJ",
452            "aliases": [
453                "jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day0_reads"
454            ],
455            "file_set_type": "experimental data",
456            "status": "released"
457        },
458        {
459            "@id": "/measurement-sets/IGVFDS1567LQJL/",
460            "accession": "IGVFDS1567LQJL",
461            "aliases": [
462                "jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day2_reads"
463            ],
464            "file_set_type": "experimental data",
465            "status": "released"
466        },
467        {
468            "@id": "/measurement-sets/IGVFDS9853FXPT/",
469            "accession": "IGVFDS9853FXPT",
470            "aliases": [
471                "jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day4_reads"
472            ],
473            "file_set_type": "experimental data",
474            "status": "released"
475        },
476        {
477            "@id": "/measurement-sets/IGVFDS3958ZVDP/",
478            "accession": "IGVFDS3958ZVDP",
479            "aliases": [
480                "jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day6_reads"
481            ],
482            "file_set_type": "experimental data",
483            "status": "released"
484        },
485        {
486            "@id": "/measurement-sets/IGVFDS7547SYUP/",
487            "accession": "IGVFDS7547SYUP",
488            "aliases": [
489                "jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day8_reads"
490            ],
491            "file_set_type": "experimental data",
492            "status": "released"
493        },
494        {
495            "@id": "/measurement-sets/IGVFDS2982RXPU/",
496            "accession": "IGVFDS2982RXPU",
497            "aliases": [
498                "jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day10_reads"
499            ],
500            "file_set_type": "experimental data",
501            "status": "released"
502        },
503        {
504            "@id": "/measurement-sets/IGVFDS6051XFAQ/",
505            "accession": "IGVFDS6051XFAQ",
506            "aliases": [
507                "jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day12_reads"
508            ],
509            "file_set_type": "experimental data",
510            "status": "released"
511        },
512        {
513            "@id": "/measurement-sets/IGVFDS9566FDYZ/",
514            "accession": "IGVFDS9566FDYZ",
515            "aliases": [
516                "jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day14_reads"
517            ],
518            "file_set_type": "experimental data",
519            "status": "released"
520        },
521        {
522            "@id": "/measurement-sets/IGVFDS9654ACTQ/",
523            "accession": "IGVFDS9654ACTQ",
524            "aliases": [
525                "jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day16_reads"
526            ],
527            "file_set_type": "experimental data",
528            "status": "released"
529        },
530        {
531            "@id": "/measurement-sets/IGVFDS1500XNWW/",
532            "accession": "IGVFDS1500XNWW",
533            "aliases": [
534                "jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day18_reads"
535            ],
536            "file_set_type": "experimental data",
537            "status": "released"
538        },
539        {
540            "@id": "/measurement-sets/IGVFDS6935HPTC/",
541            "accession": "IGVFDS6935HPTC",
542            "aliases": [
543                "jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day20_reads"
544            ],
545            "file_set_type": "experimental data",
546            "status": "released"
547        },
548        {
549            "@id": "/measurement-sets/IGVFDS2236AYJF/",
550            "accession": "IGVFDS2236AYJF",
551            "aliases": [
552                "jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day21_reads"
553            ],
554            "file_set_type": "experimental data",
555            "status": "released"
556        },
557        {
558            "@id": "/measurement-sets/IGVFDS0200DGEO/",
559            "accession": "IGVFDS0200DGEO",
560            "aliases": [
561                "jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day0_reads"
562            ],
563            "file_set_type": "experimental data",
564            "status": "released"
565        },
566        {
567            "@id": "/measurement-sets/IGVFDS2290VBBK/",
568            "accession": "IGVFDS2290VBBK",
569            "aliases": [
570                "jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day2_reads"
571            ],
572            "file_set_type": "experimental data",
573            "status": "released"
574        },
575        {
576            "@id": "/measurement-sets/IGVFDS6355YALJ/",
577            "accession": "IGVFDS6355YALJ",
578            "aliases": [
579                "jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day4_reads"
580            ],
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582            "status": "released"
583        },
584        {
585            "@id": "/measurement-sets/IGVFDS0115ZUKE/",
586            "accession": "IGVFDS0115ZUKE",
587            "aliases": [
588                "jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day6_reads"
589            ],
590            "file_set_type": "experimental data",
591            "status": "released"
592        },
593        {
594            "@id": "/measurement-sets/IGVFDS2172PVLM/",
595            "accession": "IGVFDS2172PVLM",
596            "aliases": [
597                "jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day8_reads"
598            ],
599            "file_set_type": "experimental data",
600            "status": "released"
601        },
602        {
603            "@id": "/measurement-sets/IGVFDS7261GFNR/",
604            "accession": "IGVFDS7261GFNR",
605            "aliases": [
606                "jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day10_reads"
607            ],
608            "file_set_type": "experimental data",
609            "status": "released"
610        },
611        {
612            "@id": "/measurement-sets/IGVFDS8920YVYN/",
613            "accession": "IGVFDS8920YVYN",
614            "aliases": [
615                "jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day12_reads"
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618            "status": "released"
619        },
620        {
621            "@id": "/measurement-sets/IGVFDS0885VFHW/",
622            "accession": "IGVFDS0885VFHW",
623            "aliases": [
624                "jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day14_reads"
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627            "status": "released"
628        },
629        {
630            "@id": "/measurement-sets/IGVFDS9342OPKS/",
631            "accession": "IGVFDS9342OPKS",
632            "aliases": [
633                "jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day16_reads"
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636            "status": "released"
637        },
638        {
639            "@id": "/measurement-sets/IGVFDS7930QJVE/",
640            "accession": "IGVFDS7930QJVE",
641            "aliases": [
642                "jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day18_reads"
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646        },
647        {
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650            "aliases": [
651                "jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day20_reads"
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655        },
656        {
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659            "aliases": [
660                "jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day21_reads"
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663            "status": "released"
664        },
665        {
666            "@id": "/measurement-sets/IGVFDS9778WLEE/",
667            "accession": "IGVFDS9778WLEE",
668            "aliases": [
669                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_RNA_day0_reads"
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673        },
674        {
675            "@id": "/measurement-sets/IGVFDS8540VFIL/",
676            "accession": "IGVFDS8540VFIL",
677            "aliases": [
678                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_RNA_day4_reads"
679            ],
680            "file_set_type": "experimental data",
681            "status": "released"
682        },
683        {
684            "@id": "/measurement-sets/IGVFDS0571IOSL/",
685            "accession": "IGVFDS0571IOSL",
686            "aliases": [
687                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_RNA_day8_reads"
688            ],
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690            "status": "released"
691        },
692        {
693            "@id": "/measurement-sets/IGVFDS1416HRTP/",
694            "accession": "IGVFDS1416HRTP",
695            "aliases": [
696                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_RNA_day12_reads"
697            ],
698            "file_set_type": "experimental data",
699            "status": "released"
700        },
701        {
702            "@id": "/measurement-sets/IGVFDS8017QBHO/",
703            "accession": "IGVFDS8017QBHO",
704            "aliases": [
705                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_RNA_day16_reads"
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709        },
710        {
711            "@id": "/measurement-sets/IGVFDS7581EZJY/",
712            "accession": "IGVFDS7581EZJY",
713            "aliases": [
714                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_RNA_day18_reads"
715            ],
716            "file_set_type": "experimental data",
717            "status": "released"
718        },
719        {
720            "@id": "/measurement-sets/IGVFDS0953UCYV/",
721            "accession": "IGVFDS0953UCYV",
722            "aliases": [
723                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_RNA_day20_reads"
724            ],
725            "file_set_type": "experimental data",
726            "status": "released"
727        },
728        {
729            "@id": "/measurement-sets/IGVFDS2047KEEM/",
730            "accession": "IGVFDS2047KEEM",
731            "aliases": [
732                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_RNA_day0_reads"
733            ],
734            "file_set_type": "experimental data",
735            "status": "released"
736        },
737        {
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739            "accession": "IGVFDS5335NRCO",
740            "aliases": [
741                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_RNA_day6_reads"
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743            "file_set_type": "experimental data",
744            "status": "released"
745        },
746        {
747            "@id": "/measurement-sets/IGVFDS0798CIEX/",
748            "accession": "IGVFDS0798CIEX",
749            "aliases": [
750                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_RNA_day8_reads"
751            ],
752            "file_set_type": "experimental data",
753            "status": "released"
754        },
755        {
756            "@id": "/measurement-sets/IGVFDS8306GNFB/",
757            "accession": "IGVFDS8306GNFB",
758            "aliases": [
759                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_RNA_day12_reads"
760            ],
761            "file_set_type": "experimental data",
762            "status": "released"
763        },
764        {
765            "@id": "/measurement-sets/IGVFDS2106RDJT/",
766            "accession": "IGVFDS2106RDJT",
767            "aliases": [
768                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_RNA_day16_reads"
769            ],
770            "file_set_type": "experimental data",
771            "status": "released"
772        },
773        {
774            "@id": "/measurement-sets/IGVFDS1048UDZS/",
775            "accession": "IGVFDS1048UDZS",
776            "aliases": [
777                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_RNA_day18_reads"
778            ],
779            "file_set_type": "experimental data",
780            "status": "released"
781        },
782        {
783            "@id": "/measurement-sets/IGVFDS0792FVAK/",
784            "accession": "IGVFDS0792FVAK",
785            "aliases": [
786                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_RNA_day20_reads"
787            ],
788            "file_set_type": "experimental data",
789            "status": "released"
790        }
791    ],
792    "input_for": [],
793    "lab": {
794        "@id": "/labs/jay-shendure/",
795        "title": "Jay Shendure, UW"
796    },
797    "notes": "This object's file_set_type was primary analysis and has been updated to be principal analysis.",
798    "protocols": [
799        "https://www.protocols.io/file/n92rb7r27.pdf"
800    ],
801    "publications": [
802        {
803            "@id": "/publications/398edd7f-1ebb-40a0-a04b-450a2565667c/",
804            "publication_identifiers": [
805                "doi:10.1038/s41592-024-02260-3",
806                "PMID:38724692"
807            ],
808            "status": "released"
809        }
810    ],
811    "release_timestamp": "2024-06-27T00:41:10.149811+00:00",
812    "sample_summary": "Mus musculus mouse embryonic stem differentiated cell specimen induced to embryoid body, at 0 day, 10 day, 12 day, 14 day, 16 day, 18 day, 2 day, 20 day, 21 day, 4 day, 6 day, 8 day(s) post change, transfected with a reporter library",
813    "samples": [
814        {
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816            "@type": [
817                "InVitroSystem",
818                "Biosample",
819                "Sample",
820                "Item"
821            ],
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823            "aliases": [
824                "jay-shendure:dev_CRE_mEBs_repA_bulk_day12"
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826            "classifications": [
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828            ],
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830            "sample_terms": [
831                {
832                    "@id": "/sample-terms/EFO_0004038/",
833                    "@type": [
834                        "SampleTerm",
835                        "OntologyTerm",
836                        "Item"
837                    ],
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840                    "term_name": "mouse embryonic stem cell"
841                }
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843            "status": "released",
844            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days transfected with a reporter library",
845            "targeted_sample_term": {
846                "@id": "/sample-terms/UBERON_0014374/",
847                "status": "released",
848                "term_name": "embryoid body"
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853            "@id": "/in-vitro-systems/IGVFSM5166XVRM/",
854            "@type": [
855                "InVitroSystem",
856                "Biosample",
857                "Sample",
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861            "aliases": [
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871                    "@type": [
872                        "SampleTerm",
873                        "OntologyTerm",
874                        "Item"
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883            "targeted_sample_term": {
884                "@id": "/sample-terms/UBERON_0014374/",
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893                "InVitroSystem",
894                "Biosample",
895                "Sample",
896                "Item"
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909                    "@type": [
910                        "SampleTerm",
911                        "OntologyTerm",
912                        "Item"
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930            "@type": [
931                "InVitroSystem",
932                "Biosample",
933                "Sample",
934                "Item"
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947                    "@type": [
948                        "SampleTerm",
949                        "OntologyTerm",
950                        "Item"
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954                    "term_name": "mouse embryonic stem cell"
955                }
956            ],
957            "status": "released",
958            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days transfected with a reporter library",
959            "targeted_sample_term": {
960                "@id": "/sample-terms/UBERON_0014374/",
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962                "term_name": "embryoid body"
963            },
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966        {
967            "@id": "/in-vitro-systems/IGVFSM0374VHIT/",
968            "@type": [
969                "InVitroSystem",
970                "Biosample",
971                "Sample",
972                "Item"
973            ],
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975            "aliases": [
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985                    "@type": [
986                        "SampleTerm",
987                        "OntologyTerm",
988                        "Item"
989                    ],
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991                    "summary": "mouse embryonic stem cell",
992                    "term_name": "mouse embryonic stem cell"
993                }
994            ],
995            "status": "released",
996            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 6 days transfected with a reporter library",
997            "targeted_sample_term": {
998                "@id": "/sample-terms/UBERON_0014374/",
999                "status": "released",
1000                "term_name": "embryoid body"
1001            },
1002            "taxa": "Mus musculus"
1003        },
1004        {
1005            "@id": "/in-vitro-systems/IGVFSM8231RSVA/",
1006            "@type": [
1007                "InVitroSystem",
1008                "Biosample",
1009                "Sample",
1010                "Item"
1011            ],
1012            "accession": "IGVFSM8231RSVA",
1013            "aliases": [
1014                "jay-shendure:dev_CRE_mEBs_repA_bulk_day16"
1015            ],
1016            "classifications": [
1017                "differentiated cell specimen"
1018            ],
1019            "institutional_certificates": [],
1020            "sample_terms": [
1021                {
1022                    "@id": "/sample-terms/EFO_0004038/",
1023                    "@type": [
1024                        "SampleTerm",
1025                        "OntologyTerm",
1026                        "Item"
1027                    ],
1028                    "status": "released",
1029                    "summary": "mouse embryonic stem cell",
1030                    "term_name": "mouse embryonic stem cell"
1031                }
1032            ],
1033            "status": "released",
1034            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days transfected with a reporter library",
1035            "targeted_sample_term": {
1036                "@id": "/sample-terms/UBERON_0014374/",
1037                "status": "released",
1038                "term_name": "embryoid body"
1039            },
1040            "taxa": "Mus musculus"
1041        },
1042        {
1043            "@id": "/in-vitro-systems/IGVFSM5929KNAA/",
1044            "@type": [
1045                "InVitroSystem",
1046                "Biosample",
1047                "Sample",
1048                "Item"
1049            ],
1050            "accession": "IGVFSM5929KNAA",
1051            "aliases": [
1052                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day6"
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1054            "classifications": [
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1056            ],
1057            "institutional_certificates": [],
1058            "sample_terms": [
1059                {
1060                    "@id": "/sample-terms/EFO_0004038/",
1061                    "@type": [
1062                        "SampleTerm",
1063                        "OntologyTerm",
1064                        "Item"
1065                    ],
1066                    "status": "released",
1067                    "summary": "mouse embryonic stem cell",
1068                    "term_name": "mouse embryonic stem cell"
1069                }
1070            ],
1071            "status": "released",
1072            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days transfected with a reporter library",
1073            "targeted_sample_term": {
1074                "@id": "/sample-terms/UBERON_0014374/",
1075                "status": "released",
1076                "term_name": "embryoid body"
1077            },
1078            "taxa": "Mus musculus"
1079        },
1080        {
1081            "@id": "/in-vitro-systems/IGVFSM1212IBIX/",
1082            "@type": [
1083                "InVitroSystem",
1084                "Biosample",
1085                "Sample",
1086                "Item"
1087            ],
1088            "accession": "IGVFSM1212IBIX",
1089            "aliases": [
1090                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day20"
1091            ],
1092            "classifications": [
1093                "differentiated cell specimen"
1094            ],
1095            "institutional_certificates": [],
1096            "sample_terms": [
1097                {
1098                    "@id": "/sample-terms/EFO_0004038/",
1099                    "@type": [
1100                        "SampleTerm",
1101                        "OntologyTerm",
1102                        "Item"
1103                    ],
1104                    "status": "released",
1105                    "summary": "mouse embryonic stem cell",
1106                    "term_name": "mouse embryonic stem cell"
1107                }
1108            ],
1109            "status": "released",
1110            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 20 days transfected with a reporter library",
1111            "targeted_sample_term": {
1112                "@id": "/sample-terms/UBERON_0014374/",
1113                "status": "released",
1114                "term_name": "embryoid body"
1115            },
1116            "taxa": "Mus musculus"
1117        },
1118        {
1119            "@id": "/in-vitro-systems/IGVFSM5978TPKG/",
1120            "@type": [
1121                "InVitroSystem",
1122                "Biosample",
1123                "Sample",
1124                "Item"
1125            ],
1126            "accession": "IGVFSM5978TPKG",
1127            "aliases": [
1128                "jay-shendure:dev_CRE_mEBs_repB_bulk_day4"
1129            ],
1130            "classifications": [
1131                "differentiated cell specimen"
1132            ],
1133            "institutional_certificates": [],
1134            "sample_terms": [
1135                {
1136                    "@id": "/sample-terms/EFO_0004038/",
1137                    "@type": [
1138                        "SampleTerm",
1139                        "OntologyTerm",
1140                        "Item"
1141                    ],
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1144                    "term_name": "mouse embryonic stem cell"
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1146            ],
1147            "status": "released",
1148            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days transfected with a reporter library",
1149            "targeted_sample_term": {
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1152                "term_name": "embryoid body"
1153            },
1154            "taxa": "Mus musculus"
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1156        {
1157            "@id": "/in-vitro-systems/IGVFSM0731AZZQ/",
1158            "@type": [
1159                "InVitroSystem",
1160                "Biosample",
1161                "Sample",
1162                "Item"
1163            ],
1164            "accession": "IGVFSM0731AZZQ",
1165            "aliases": [
1166                "jay-shendure:dev_CRE_mEBs_repB_bulk_day20"
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1168            "classifications": [
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1172            "sample_terms": [
1173                {
1174                    "@id": "/sample-terms/EFO_0004038/",
1175                    "@type": [
1176                        "SampleTerm",
1177                        "OntologyTerm",
1178                        "Item"
1179                    ],
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1182                    "term_name": "mouse embryonic stem cell"
1183                }
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1185            "status": "released",
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1187            "targeted_sample_term": {
1188                "@id": "/sample-terms/UBERON_0014374/",
1189                "status": "released",
1190                "term_name": "embryoid body"
1191            },
1192            "taxa": "Mus musculus"
1193        },
1194        {
1195            "@id": "/in-vitro-systems/IGVFSM7280CZVB/",
1196            "@type": [
1197                "InVitroSystem",
1198                "Biosample",
1199                "Sample",
1200                "Item"
1201            ],
1202            "accession": "IGVFSM7280CZVB",
1203            "aliases": [
1204                "jay-shendure:dev_CRE_mEBs_repB_bulk_day21"
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1206            "classifications": [
1207                "differentiated cell specimen"
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1210            "sample_terms": [
1211                {
1212                    "@id": "/sample-terms/EFO_0004038/",
1213                    "@type": [
1214                        "SampleTerm",
1215                        "OntologyTerm",
1216                        "Item"
1217                    ],
1218                    "status": "released",
1219                    "summary": "mouse embryonic stem cell",
1220                    "term_name": "mouse embryonic stem cell"
1221                }
1222            ],
1223            "status": "released",
1224            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days transfected with a reporter library",
1225            "targeted_sample_term": {
1226                "@id": "/sample-terms/UBERON_0014374/",
1227                "status": "released",
1228                "term_name": "embryoid body"
1229            },
1230            "taxa": "Mus musculus"
1231        },
1232        {
1233            "@id": "/in-vitro-systems/IGVFSM6391CMQH/",
1234            "@type": [
1235                "InVitroSystem",
1236                "Biosample",
1237                "Sample",
1238                "Item"
1239            ],
1240            "accession": "IGVFSM6391CMQH",
1241            "aliases": [
1242                "jay-shendure:dev_CRE_mEBs_repB_bulk_day10"
1243            ],
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1245                "differentiated cell specimen"
1246            ],
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1248            "sample_terms": [
1249                {
1250                    "@id": "/sample-terms/EFO_0004038/",
1251                    "@type": [
1252                        "SampleTerm",
1253                        "OntologyTerm",
1254                        "Item"
1255                    ],
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1257                    "summary": "mouse embryonic stem cell",
1258                    "term_name": "mouse embryonic stem cell"
1259                }
1260            ],
1261            "status": "released",
1262            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 10 days transfected with a reporter library",
1263            "targeted_sample_term": {
1264                "@id": "/sample-terms/UBERON_0014374/",
1265                "status": "released",
1266                "term_name": "embryoid body"
1267            },
1268            "taxa": "Mus musculus"
1269        },
1270        {
1271            "@id": "/in-vitro-systems/IGVFSM1838HBLK/",
1272            "@type": [
1273                "InVitroSystem",
1274                "Biosample",
1275                "Sample",
1276                "Item"
1277            ],
1278            "accession": "IGVFSM1838HBLK",
1279            "aliases": [
1280                "jay-shendure:dev_CRE_mEBs_repA_bulk_day10"
1281            ],
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1283                "differentiated cell specimen"
1284            ],
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1286            "sample_terms": [
1287                {
1288                    "@id": "/sample-terms/EFO_0004038/",
1289                    "@type": [
1290                        "SampleTerm",
1291                        "OntologyTerm",
1292                        "Item"
1293                    ],
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1295                    "summary": "mouse embryonic stem cell",
1296                    "term_name": "mouse embryonic stem cell"
1297                }
1298            ],
1299            "status": "released",
1300            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 10 days transfected with a reporter library",
1301            "targeted_sample_term": {
1302                "@id": "/sample-terms/UBERON_0014374/",
1303                "status": "released",
1304                "term_name": "embryoid body"
1305            },
1306            "taxa": "Mus musculus"
1307        },
1308        {
1309            "@id": "/in-vitro-systems/IGVFSM3379XAQN/",
1310            "@type": [
1311                "InVitroSystem",
1312                "Biosample",
1313                "Sample",
1314                "Item"
1315            ],
1316            "accession": "IGVFSM3379XAQN",
1317            "aliases": [
1318                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day18"
1319            ],
1320            "classifications": [
1321                "differentiated cell specimen"
1322            ],
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1324            "sample_terms": [
1325                {
1326                    "@id": "/sample-terms/EFO_0004038/",
1327                    "@type": [
1328                        "SampleTerm",
1329                        "OntologyTerm",
1330                        "Item"
1331                    ],
1332                    "status": "released",
1333                    "summary": "mouse embryonic stem cell",
1334                    "term_name": "mouse embryonic stem cell"
1335                }
1336            ],
1337            "status": "released",
1338            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 18 days transfected with a reporter library",
1339            "targeted_sample_term": {
1340                "@id": "/sample-terms/UBERON_0014374/",
1341                "status": "released",
1342                "term_name": "embryoid body"
1343            },
1344            "taxa": "Mus musculus"
1345        },
1346        {
1347            "@id": "/in-vitro-systems/IGVFSM6856KISH/",
1348            "@type": [
1349                "InVitroSystem",
1350                "Biosample",
1351                "Sample",
1352                "Item"
1353            ],
1354            "accession": "IGVFSM6856KISH",
1355            "aliases": [
1356                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day12"
1357            ],
1358            "classifications": [
1359                "differentiated cell specimen"
1360            ],
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1362            "sample_terms": [
1363                {
1364                    "@id": "/sample-terms/EFO_0004038/",
1365                    "@type": [
1366                        "SampleTerm",
1367                        "OntologyTerm",
1368                        "Item"
1369                    ],
1370                    "status": "released",
1371                    "summary": "mouse embryonic stem cell",
1372                    "term_name": "mouse embryonic stem cell"
1373                }
1374            ],
1375            "status": "released",
1376            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days transfected with a reporter library",
1377            "targeted_sample_term": {
1378                "@id": "/sample-terms/UBERON_0014374/",
1379                "status": "released",
1380                "term_name": "embryoid body"
1381            },
1382            "taxa": "Mus musculus"
1383        },
1384        {
1385            "@id": "/in-vitro-systems/IGVFSM3017QZLW/",
1386            "@type": [
1387                "InVitroSystem",
1388                "Biosample",
1389                "Sample",
1390                "Item"
1391            ],
1392            "accession": "IGVFSM3017QZLW",
1393            "aliases": [
1394                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day20"
1395            ],
1396            "classifications": [
1397                "differentiated cell specimen"
1398            ],
1399            "institutional_certificates": [],
1400            "sample_terms": [
1401                {
1402                    "@id": "/sample-terms/EFO_0004038/",
1403                    "@type": [
1404                        "SampleTerm",
1405                        "OntologyTerm",
1406                        "Item"
1407                    ],
1408                    "status": "released",
1409                    "summary": "mouse embryonic stem cell",
1410                    "term_name": "mouse embryonic stem cell"
1411                }
1412            ],
1413            "status": "released",
1414            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 20 days transfected with a reporter library",
1415            "targeted_sample_term": {
1416                "@id": "/sample-terms/UBERON_0014374/",
1417                "status": "released",
1418                "term_name": "embryoid body"
1419            },
1420            "taxa": "Mus musculus"
1421        },
1422        {
1423            "@id": "/in-vitro-systems/IGVFSM3027MUYF/",
1424            "@type": [
1425                "InVitroSystem",
1426                "Biosample",
1427                "Sample",
1428                "Item"
1429            ],
1430            "accession": "IGVFSM3027MUYF",
1431            "aliases": [
1432                "jay-shendure:dev_CRE_mEBs_repA_bulk_day21"
1433            ],
1434            "classifications": [
1435                "differentiated cell specimen"
1436            ],
1437            "institutional_certificates": [],
1438            "sample_terms": [
1439                {
1440                    "@id": "/sample-terms/EFO_0004038/",
1441                    "@type": [
1442                        "SampleTerm",
1443                        "OntologyTerm",
1444                        "Item"
1445                    ],
1446                    "status": "released",
1447                    "summary": "mouse embryonic stem cell",
1448                    "term_name": "mouse embryonic stem cell"
1449                }
1450            ],
1451            "status": "released",
1452            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days transfected with a reporter library",
1453            "targeted_sample_term": {
1454                "@id": "/sample-terms/UBERON_0014374/",
1455                "status": "released",
1456                "term_name": "embryoid body"
1457            },
1458            "taxa": "Mus musculus"
1459        },
1460        {
1461            "@id": "/in-vitro-systems/IGVFSM0091UGGN/",
1462            "@type": [
1463                "InVitroSystem",
1464                "Biosample",
1465                "Sample",
1466                "Item"
1467            ],
1468            "accession": "IGVFSM0091UGGN",
1469            "aliases": [
1470                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day8"
1471            ],
1472            "classifications": [
1473                "differentiated cell specimen"
1474            ],
1475            "institutional_certificates": [],
1476            "sample_terms": [
1477                {
1478                    "@id": "/sample-terms/EFO_0004038/",
1479                    "@type": [
1480                        "SampleTerm",
1481                        "OntologyTerm",
1482                        "Item"
1483                    ],
1484                    "status": "released",
1485                    "summary": "mouse embryonic stem cell",
1486                    "term_name": "mouse embryonic stem cell"
1487                }
1488            ],
1489            "status": "released",
1490            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 8 days transfected with a reporter library",
1491            "targeted_sample_term": {
1492                "@id": "/sample-terms/UBERON_0014374/",
1493                "status": "released",
1494                "term_name": "embryoid body"
1495            },
1496            "taxa": "Mus musculus"
1497        },
1498        {
1499            "@id": "/in-vitro-systems/IGVFSM4092RUKD/",
1500            "@type": [
1501                "InVitroSystem",
1502                "Biosample",
1503                "Sample",
1504                "Item"
1505            ],
1506            "accession": "IGVFSM4092RUKD",
1507            "aliases": [
1508                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day16"
1509            ],
1510            "classifications": [
1511                "differentiated cell specimen"
1512            ],
1513            "institutional_certificates": [],
1514            "sample_terms": [
1515                {
1516                    "@id": "/sample-terms/EFO_0004038/",
1517                    "@type": [
1518                        "SampleTerm",
1519                        "OntologyTerm",
1520                        "Item"
1521                    ],
1522                    "status": "released",
1523                    "summary": "mouse embryonic stem cell",
1524                    "term_name": "mouse embryonic stem cell"
1525                }
1526            ],
1527            "status": "released",
1528            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days transfected with a reporter library",
1529            "targeted_sample_term": {
1530                "@id": "/sample-terms/UBERON_0014374/",
1531                "status": "released",
1532                "term_name": "embryoid body"
1533            },
1534            "taxa": "Mus musculus"
1535        },
1536        {
1537            "@id": "/in-vitro-systems/IGVFSM9047XSAG/",
1538            "@type": [
1539                "InVitroSystem",
1540                "Biosample",
1541                "Sample",
1542                "Item"
1543            ],
1544            "accession": "IGVFSM9047XSAG",
1545            "aliases": [
1546                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day16"
1547            ],
1548            "classifications": [
1549                "differentiated cell specimen"
1550            ],
1551            "institutional_certificates": [],
1552            "sample_terms": [
1553                {
1554                    "@id": "/sample-terms/EFO_0004038/",
1555                    "@type": [
1556                        "SampleTerm",
1557                        "OntologyTerm",
1558                        "Item"
1559                    ],
1560                    "status": "released",
1561                    "summary": "mouse embryonic stem cell",
1562                    "term_name": "mouse embryonic stem cell"
1563                }
1564            ],
1565            "status": "released",
1566            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days transfected with a reporter library",
1567            "targeted_sample_term": {
1568                "@id": "/sample-terms/UBERON_0014374/",
1569                "status": "released",
1570                "term_name": "embryoid body"
1571            },
1572            "taxa": "Mus musculus"
1573        },
1574        {
1575            "@id": "/in-vitro-systems/IGVFSM0716YPPC/",
1576            "@type": [
1577                "InVitroSystem",
1578                "Biosample",
1579                "Sample",
1580                "Item"
1581            ],
1582            "accession": "IGVFSM0716YPPC",
1583            "aliases": [
1584                "jay-shendure:dev_CRE_mEBs_repA_bulk_day0"
1585            ],
1586            "classifications": [
1587                "differentiated cell specimen"
1588            ],
1589            "institutional_certificates": [],
1590            "sample_terms": [
1591                {
1592                    "@id": "/sample-terms/EFO_0004038/",
1593                    "@type": [
1594                        "SampleTerm",
1595                        "OntologyTerm",
1596                        "Item"
1597                    ],
1598                    "status": "released",
1599                    "summary": "mouse embryonic stem cell",
1600                    "term_name": "mouse embryonic stem cell"
1601                }
1602            ],
1603            "status": "released",
1604            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen transfected with a reporter library",
1605            "targeted_sample_term": {
1606                "@id": "/sample-terms/UBERON_0014374/",
1607                "status": "released",
1608                "term_name": "embryoid body"
1609            },
1610            "taxa": "Mus musculus"
1611        },
1612        {
1613            "@id": "/in-vitro-systems/IGVFSM3228TEOC/",
1614            "@type": [
1615                "InVitroSystem",
1616                "Biosample",
1617                "Sample",
1618                "Item"
1619            ],
1620            "accession": "IGVFSM3228TEOC",
1621            "aliases": [
1622                "jay-shendure:dev_CRE_mEBs_repB_bulk_day0"
1623            ],
1624            "classifications": [
1625                "differentiated cell specimen"
1626            ],
1627            "institutional_certificates": [],
1628            "sample_terms": [
1629                {
1630                    "@id": "/sample-terms/EFO_0004038/",
1631                    "@type": [
1632                        "SampleTerm",
1633                        "OntologyTerm",
1634                        "Item"
1635                    ],
1636                    "status": "released",
1637                    "summary": "mouse embryonic stem cell",
1638                    "term_name": "mouse embryonic stem cell"
1639                }
1640            ],
1641            "status": "released",
1642            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen transfected with a reporter library",
1643            "targeted_sample_term": {
1644                "@id": "/sample-terms/UBERON_0014374/",
1645                "status": "released",
1646                "term_name": "embryoid body"
1647            },
1648            "taxa": "Mus musculus"
1649        },
1650        {
1651            "@id": "/in-vitro-systems/IGVFSM8160AXXB/",
1652            "@type": [
1653                "InVitroSystem",
1654                "Biosample",
1655                "Sample",
1656                "Item"
1657            ],
1658            "accession": "IGVFSM8160AXXB",
1659            "aliases": [
1660                "jay-shendure:dev_CRE_mEBs_repA_bulk_day6"
1661            ],
1662            "classifications": [
1663                "differentiated cell specimen"
1664            ],
1665            "institutional_certificates": [],
1666            "sample_terms": [
1667                {
1668                    "@id": "/sample-terms/EFO_0004038/",
1669                    "@type": [
1670                        "SampleTerm",
1671                        "OntologyTerm",
1672                        "Item"
1673                    ],
1674                    "status": "released",
1675                    "summary": "mouse embryonic stem cell",
1676                    "term_name": "mouse embryonic stem cell"
1677                }
1678            ],
1679            "status": "released",
1680            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 6 days transfected with a reporter library",
1681            "targeted_sample_term": {
1682                "@id": "/sample-terms/UBERON_0014374/",
1683                "status": "released",
1684                "term_name": "embryoid body"
1685            },
1686            "taxa": "Mus musculus"
1687        },
1688        {
1689            "@id": "/in-vitro-systems/IGVFSM1671CSBE/",
1690            "@type": [
1691                "InVitroSystem",
1692                "Biosample",
1693                "Sample",
1694                "Item"
1695            ],
1696            "accession": "IGVFSM1671CSBE",
1697            "aliases": [
1698                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day0"
1699            ],
1700            "classifications": [
1701                "differentiated cell specimen"
1702            ],
1703            "institutional_certificates": [],
1704            "sample_terms": [
1705                {
1706                    "@id": "/sample-terms/EFO_0004038/",
1707                    "@type": [
1708                        "SampleTerm",
1709                        "OntologyTerm",
1710                        "Item"
1711                    ],
1712                    "status": "released",
1713                    "summary": "mouse embryonic stem cell",
1714                    "term_name": "mouse embryonic stem cell"
1715                }
1716            ],
1717            "status": "released",
1718            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen transfected with a reporter library",
1719            "targeted_sample_term": {
1720                "@id": "/sample-terms/UBERON_0014374/",
1721                "status": "released",
1722                "term_name": "embryoid body"
1723            },
1724            "taxa": "Mus musculus"
1725        },
1726        {
1727            "@id": "/in-vitro-systems/IGVFSM5738IXAN/",
1728            "@type": [
1729                "InVitroSystem",
1730                "Biosample",
1731                "Sample",
1732                "Item"
1733            ],
1734            "accession": "IGVFSM5738IXAN",
1735            "aliases": [
1736                "jay-shendure:dev_CRE_mEBs_repA_bulk_day2"
1737            ],
1738            "classifications": [
1739                "differentiated cell specimen"
1740            ],
1741            "institutional_certificates": [],
1742            "sample_terms": [
1743                {
1744                    "@id": "/sample-terms/EFO_0004038/",
1745                    "@type": [
1746                        "SampleTerm",
1747                        "OntologyTerm",
1748                        "Item"
1749                    ],
1750                    "status": "released",
1751                    "summary": "mouse embryonic stem cell",
1752                    "term_name": "mouse embryonic stem cell"
1753                }
1754            ],
1755            "status": "released",
1756            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 2 days transfected with a reporter library",
1757            "targeted_sample_term": {
1758                "@id": "/sample-terms/UBERON_0014374/",
1759                "status": "released",
1760                "term_name": "embryoid body"
1761            },
1762            "taxa": "Mus musculus"
1763        },
1764        {
1765            "@id": "/in-vitro-systems/IGVFSM5739JCXR/",
1766            "@type": [
1767                "InVitroSystem",
1768                "Biosample",
1769                "Sample",
1770                "Item"
1771            ],
1772            "accession": "IGVFSM5739JCXR",
1773            "aliases": [
1774                "jay-shendure:dev_CRE_mEBs_repA_bulk_day14"
1775            ],
1776            "classifications": [
1777                "differentiated cell specimen"
1778            ],
1779            "institutional_certificates": [],
1780            "sample_terms": [
1781                {
1782                    "@id": "/sample-terms/EFO_0004038/",
1783                    "@type": [
1784                        "SampleTerm",
1785                        "OntologyTerm",
1786                        "Item"
1787                    ],
1788                    "status": "released",
1789                    "summary": "mouse embryonic stem cell",
1790                    "term_name": "mouse embryonic stem cell"
1791                }
1792            ],
1793            "status": "released",
1794            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 14 days transfected with a reporter library",
1795            "targeted_sample_term": {
1796                "@id": "/sample-terms/UBERON_0014374/",
1797                "status": "released",
1798                "term_name": "embryoid body"
1799            },
1800            "taxa": "Mus musculus"
1801        },
1802        {
1803            "@id": "/in-vitro-systems/IGVFSM2212NOOQ/",
1804            "@type": [
1805                "InVitroSystem",
1806                "Biosample",
1807                "Sample",
1808                "Item"
1809            ],
1810            "accession": "IGVFSM2212NOOQ",
1811            "aliases": [
1812                "jay-shendure:dev_CRE_mEBs_repB_bulk_day18"
1813            ],
1814            "classifications": [
1815                "differentiated cell specimen"
1816            ],
1817            "institutional_certificates": [],
1818            "sample_terms": [
1819                {
1820                    "@id": "/sample-terms/EFO_0004038/",
1821                    "@type": [
1822                        "SampleTerm",
1823                        "OntologyTerm",
1824                        "Item"
1825                    ],
1826                    "status": "released",
1827                    "summary": "mouse embryonic stem cell",
1828                    "term_name": "mouse embryonic stem cell"
1829                }
1830            ],
1831            "status": "released",
1832            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 18 days transfected with a reporter library",
1833            "targeted_sample_term": {
1834                "@id": "/sample-terms/UBERON_0014374/",
1835                "status": "released",
1836                "term_name": "embryoid body"
1837            },
1838            "taxa": "Mus musculus"
1839        },
1840        {
1841            "@id": "/in-vitro-systems/IGVFSM9302LKGG/",
1842            "@type": [
1843                "InVitroSystem",
1844                "Biosample",
1845                "Sample",
1846                "Item"
1847            ],
1848            "accession": "IGVFSM9302LKGG",
1849            "aliases": [
1850                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day18"
1851            ],
1852            "classifications": [
1853                "differentiated cell specimen"
1854            ],
1855            "institutional_certificates": [],
1856            "sample_terms": [
1857                {
1858                    "@id": "/sample-terms/EFO_0004038/",
1859                    "@type": [
1860                        "SampleTerm",
1861                        "OntologyTerm",
1862                        "Item"
1863                    ],
1864                    "status": "released",
1865                    "summary": "mouse embryonic stem cell",
1866                    "term_name": "mouse embryonic stem cell"
1867                }
1868            ],
1869            "status": "released",
1870            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 18 days transfected with a reporter library",
1871            "targeted_sample_term": {
1872                "@id": "/sample-terms/UBERON_0014374/",
1873                "status": "released",
1874                "term_name": "embryoid body"
1875            },
1876            "taxa": "Mus musculus"
1877        },
1878        {
1879            "@id": "/in-vitro-systems/IGVFSM5894TCUC/",
1880            "@type": [
1881                "InVitroSystem",
1882                "Biosample",
1883                "Sample",
1884                "Item"
1885            ],
1886            "accession": "IGVFSM5894TCUC",
1887            "aliases": [
1888                "jay-shendure:dev_CRE_mEBs_repA_bulk_day8"
1889            ],
1890            "classifications": [
1891                "differentiated cell specimen"
1892            ],
1893            "institutional_certificates": [],
1894            "sample_terms": [
1895                {
1896                    "@id": "/sample-terms/EFO_0004038/",
1897                    "@type": [
1898                        "SampleTerm",
1899                        "OntologyTerm",
1900                        "Item"
1901                    ],
1902                    "status": "released",
1903                    "summary": "mouse embryonic stem cell",
1904                    "term_name": "mouse embryonic stem cell"
1905                }
1906            ],
1907            "status": "released",
1908            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 8 days transfected with a reporter library",
1909            "targeted_sample_term": {
1910                "@id": "/sample-terms/UBERON_0014374/",
1911                "status": "released",
1912                "term_name": "embryoid body"
1913            },
1914            "taxa": "Mus musculus"
1915        },
1916        {
1917            "@id": "/in-vitro-systems/IGVFSM7613TOIM/",
1918            "@type": [
1919                "InVitroSystem",
1920                "Biosample",
1921                "Sample",
1922                "Item"
1923            ],
1924            "accession": "IGVFSM7613TOIM",
1925            "aliases": [
1926                "jay-shendure:dev_CRE_mEBs_repA_bulk_day4"
1927            ],
1928            "classifications": [
1929                "differentiated cell specimen"
1930            ],
1931            "institutional_certificates": [],
1932            "sample_terms": [
1933                {
1934                    "@id": "/sample-terms/EFO_0004038/",
1935                    "@type": [
1936                        "SampleTerm",
1937                        "OntologyTerm",
1938                        "Item"
1939                    ],
1940                    "status": "released",
1941                    "summary": "mouse embryonic stem cell",
1942                    "term_name": "mouse embryonic stem cell"
1943                }
1944            ],
1945            "status": "released",
1946            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days transfected with a reporter library",
1947            "targeted_sample_term": {
1948                "@id": "/sample-terms/UBERON_0014374/",
1949                "status": "released",
1950                "term_name": "embryoid body"
1951            },
1952            "taxa": "Mus musculus"
1953        },
1954        {
1955            "@id": "/in-vitro-systems/IGVFSM1019NMFD/",
1956            "@type": [
1957                "InVitroSystem",
1958                "Biosample",
1959                "Sample",
1960                "Item"
1961            ],
1962            "accession": "IGVFSM1019NMFD",
1963            "aliases": [
1964                "jay-shendure:dev_CRE_mEBs_repA_bulk_day18"
1965            ],
1966            "classifications": [
1967                "differentiated cell specimen"
1968            ],
1969            "institutional_certificates": [],
1970            "sample_terms": [
1971                {
1972                    "@id": "/sample-terms/EFO_0004038/",
1973                    "@type": [
1974                        "SampleTerm",
1975                        "OntologyTerm",
1976                        "Item"
1977                    ],
1978                    "status": "released",
1979                    "summary": "mouse embryonic stem cell",
1980                    "term_name": "mouse embryonic stem cell"
1981                }
1982            ],
1983            "status": "released",
1984            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 18 days transfected with a reporter library",
1985            "targeted_sample_term": {
1986                "@id": "/sample-terms/UBERON_0014374/",
1987                "status": "released",
1988                "term_name": "embryoid body"
1989            },
1990            "taxa": "Mus musculus"
1991        },
1992        {
1993            "@id": "/in-vitro-systems/IGVFSM8780MGRB/",
1994            "@type": [
1995                "InVitroSystem",
1996                "Biosample",
1997                "Sample",
1998                "Item"
1999            ],
2000            "accession": "IGVFSM8780MGRB",
2001            "aliases": [
2002                "jay-shendure:dev_CRE_mEBs_repB_bulk_day16"
2003            ],
2004            "classifications": [
2005                "differentiated cell specimen"
2006            ],
2007            "institutional_certificates": [],
2008            "sample_terms": [
2009                {
2010                    "@id": "/sample-terms/EFO_0004038/",
2011                    "@type": [
2012                        "SampleTerm",
2013                        "OntologyTerm",
2014                        "Item"
2015                    ],
2016                    "status": "released",
2017                    "summary": "mouse embryonic stem cell",
2018                    "term_name": "mouse embryonic stem cell"
2019                }
2020            ],
2021            "status": "released",
2022            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days transfected with a reporter library",
2023            "targeted_sample_term": {
2024                "@id": "/sample-terms/UBERON_0014374/",
2025                "status": "released",
2026                "term_name": "embryoid body"
2027            },
2028            "taxa": "Mus musculus"
2029        },
2030        {
2031            "@id": "/in-vitro-systems/IGVFSM3811HZXX/",
2032            "@type": [
2033                "InVitroSystem",
2034                "Biosample",
2035                "Sample",
2036                "Item"
2037            ],
2038            "accession": "IGVFSM3811HZXX",
2039            "aliases": [
2040                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day4"
2041            ],
2042            "classifications": [
2043                "differentiated cell specimen"
2044            ],
2045            "institutional_certificates": [],
2046            "sample_terms": [
2047                {
2048                    "@id": "/sample-terms/EFO_0004038/",
2049                    "@type": [
2050                        "SampleTerm",
2051                        "OntologyTerm",
2052                        "Item"
2053                    ],
2054                    "status": "released",
2055                    "summary": "mouse embryonic stem cell",
2056                    "term_name": "mouse embryonic stem cell"
2057                }
2058            ],
2059            "status": "released",
2060            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days transfected with a reporter library",
2061            "targeted_sample_term": {
2062                "@id": "/sample-terms/UBERON_0014374/",
2063                "status": "released",
2064                "term_name": "embryoid body"
2065            },
2066            "taxa": "Mus musculus"
2067        },
2068        {
2069            "@id": "/in-vitro-systems/IGVFSM8486OPKV/",
2070            "@type": [
2071                "InVitroSystem",
2072                "Biosample",
2073                "Sample",
2074                "Item"
2075            ],
2076            "accession": "IGVFSM8486OPKV",
2077            "aliases": [
2078                "jay-shendure:dev_CRE_mEBs_repB_bulk_day2"
2079            ],
2080            "classifications": [
2081                "differentiated cell specimen"
2082            ],
2083            "institutional_certificates": [],
2084            "sample_terms": [
2085                {
2086                    "@id": "/sample-terms/EFO_0004038/",
2087                    "@type": [
2088                        "SampleTerm",
2089                        "OntologyTerm",
2090                        "Item"
2091                    ],
2092                    "status": "released",
2093                    "summary": "mouse embryonic stem cell",
2094                    "term_name": "mouse embryonic stem cell"
2095                }
2096            ],
2097            "status": "released",
2098            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 2 days transfected with a reporter library",
2099            "targeted_sample_term": {
2100                "@id": "/sample-terms/UBERON_0014374/",
2101                "status": "released",
2102                "term_name": "embryoid body"
2103            },
2104            "taxa": "Mus musculus"
2105        },
2106        {
2107            "@id": "/in-vitro-systems/IGVFSM7918INCH/",
2108            "@type": [
2109                "InVitroSystem",
2110                "Biosample",
2111                "Sample",
2112                "Item"
2113            ],
2114            "accession": "IGVFSM7918INCH",
2115            "aliases": [
2116                "jay-shendure:dev_CRE_mEBs_repA_bulk_day20"
2117            ],
2118            "classifications": [
2119                "differentiated cell specimen"
2120            ],
2121            "institutional_certificates": [],
2122            "sample_terms": [
2123                {
2124                    "@id": "/sample-terms/EFO_0004038/",
2125                    "@type": [
2126                        "SampleTerm",
2127                        "OntologyTerm",
2128                        "Item"
2129                    ],
2130                    "status": "released",
2131                    "summary": "mouse embryonic stem cell",
2132                    "term_name": "mouse embryonic stem cell"
2133                }
2134            ],
2135            "status": "released",
2136            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 20 days transfected with a reporter library",
2137            "targeted_sample_term": {
2138                "@id": "/sample-terms/UBERON_0014374/",
2139                "status": "released",
2140                "term_name": "embryoid body"
2141            },
2142            "taxa": "Mus musculus"
2143        },
2144        {
2145            "@id": "/in-vitro-systems/IGVFSM0608PJZS/",
2146            "@type": [
2147                "InVitroSystem",
2148                "Biosample",
2149                "Sample",
2150                "Item"
2151            ],
2152            "accession": "IGVFSM0608PJZS",
2153            "aliases": [
2154                "jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_day12"
2155            ],
2156            "classifications": [
2157                "differentiated cell specimen"
2158            ],
2159            "institutional_certificates": [],
2160            "sample_terms": [
2161                {
2162                    "@id": "/sample-terms/EFO_0004038/",
2163                    "@type": [
2164                        "SampleTerm",
2165                        "OntologyTerm",
2166                        "Item"
2167                    ],
2168                    "status": "released",
2169                    "summary": "mouse embryonic stem cell",
2170                    "term_name": "mouse embryonic stem cell"
2171                }
2172            ],
2173            "status": "released",
2174            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 12 days transfected with a reporter library",
2175            "targeted_sample_term": {
2176                "@id": "/sample-terms/UBERON_0014374/",
2177                "status": "released",
2178                "term_name": "embryoid body"
2179            },
2180            "taxa": "Mus musculus"
2181        },
2182        {
2183            "@id": "/in-vitro-systems/IGVFSM3546ITTD/",
2184            "@type": [
2185                "InVitroSystem",
2186                "Biosample",
2187                "Sample",
2188                "Item"
2189            ],
2190            "accession": "IGVFSM3546ITTD",
2191            "aliases": [
2192                "jay-shendure:dev_CRE_mEBs_repB_bulk_day14"
2193            ],
2194            "classifications": [
2195                "differentiated cell specimen"
2196            ],
2197            "institutional_certificates": [],
2198            "sample_terms": [
2199                {
2200                    "@id": "/sample-terms/EFO_0004038/",
2201                    "@type": [
2202                        "SampleTerm",
2203                        "OntologyTerm",
2204                        "Item"
2205                    ],
2206                    "status": "released",
2207                    "summary": "mouse embryonic stem cell",
2208                    "term_name": "mouse embryonic stem cell"
2209                }
2210            ],
2211            "status": "released",
2212            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 14 days transfected with a reporter library",
2213            "targeted_sample_term": {
2214                "@id": "/sample-terms/UBERON_0014374/",
2215                "status": "released",
2216                "term_name": "embryoid body"
2217            },
2218            "taxa": "Mus musculus"
2219        },
2220        {
2221            "@id": "/in-vitro-systems/IGVFSM7672WVIM/",
2222            "@type": [
2223                "InVitroSystem",
2224                "Biosample",
2225                "Sample",
2226                "Item"
2227            ],
2228            "accession": "IGVFSM7672WVIM",
2229            "aliases": [
2230                "jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_day8"
2231            ],
2232            "classifications": [
2233                "differentiated cell specimen"
2234            ],
2235            "institutional_certificates": [],
2236            "sample_terms": [
2237                {
2238                    "@id": "/sample-terms/EFO_0004038/",
2239                    "@type": [
2240                        "SampleTerm",
2241                        "OntologyTerm",
2242                        "Item"
2243                    ],
2244                    "status": "released",
2245                    "summary": "mouse embryonic stem cell",
2246                    "term_name": "mouse embryonic stem cell"
2247                }
2248            ],
2249            "status": "released",
2250            "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 8 days transfected with a reporter library",
2251            "targeted_sample_term": {
2252                "@id": "/sample-terms/UBERON_0014374/",
2253                "status": "released",
2254                "term_name": "embryoid body"
2255            },
2256            "taxa": "Mus musculus"
2257        }
2258    ],
2259    "schema_version": "9",
2260    "status": "released",
2261    "submitted_by": {
2262        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
2263        "title": "Beth Martin"
2264    },
2265    "submitted_files_timestamp": "2024-05-07T19:59:38.674958+00:00",
2266    "summary": "MPRA: element quantifications",
2267    "uuid": "04893391-d7b4-467c-aa36-d750ac58d872",
2268    "workflows": [
2269        {
2270            "@id": "/workflows/IGVFWF8634SBAX/",
2271            "accession": "IGVFWF8634SBAX",
2272            "name": "Shendure bulk scQer MPRA Pipeline",
2273            "status": "released",
2274            "uniform_pipeline": false
2275        }
2276    ]
2277}