Home

IGVFDS2165KBMD

released
File Set Type
principal analysis
Summary
lentiMPRA: reporter experiment
Workflows
Samples
neural progenitor cell pooled cell specimen, transfected with a reporter library
Protocols

Files

2 items
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
553 KB
validated
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
543 KB
validated

File Association Graph

Loading…
File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
neural progenitor pooled cell specimen, Homo sapiens transduced (lentivirus) with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
unspecified
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder

MeasurementSet Input File Sets

3 items
Associated Auxiliary Sets
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
neural progenitor pooled cell specimen, Homo sapiens transduced (lentivirus) with a reporter library
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
neural progenitor pooled cell specimen, Homo sapiens transduced (lentivirus) with a reporter library
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
neural progenitor pooled cell specimen, Homo sapiens transduced (lentivirus) with a reporter library

AnalysisSet Input File Sets

1 item
Accession
Summary
lentiMPRA: barcode to element mapping

AuxiliarySet Input File Sets

3 items
Associated Measurement Sets
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder

Documents

2 items
Page
Preview
QC report experiment MPRAsnakeflow v0.3.0
quality control report
MPRAsnakeflow v0.3.0 experimemt workflow config file
computational protocol

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Nadav Ahituv, UCSF