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IGVFDS2165KBMD

released
File Set Type
principal analysis
Summary
lentiMPRA: reporter experiment, reporter experiment barcode
Workflows
Samples
Homo sapiens H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron, at 7 day(s) post change, transfected with a reporter library
Protocols
Attribution
Nadav Ahituv, UCSF

Files

2 items
tsv
reporter experiment
hg19 reporter experiment
Nadav Ahituv, UCSF
553 KB
validated
tsv
reporter experiment
hg19 reporter experiment
Nadav Ahituv, UCSF
543 KB
validated

File Association Graph

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File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_H1
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder

MeasurementSet Input File Sets

3 items
Associated Auxiliary Sets
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library

AnalysisSet Input File Sets

1 item
Accession
Summary
Unspecified assay: barcode to element mapping

AuxiliarySet Input File Sets

3 items
Associated Measurement Sets
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder

Documents

2 items
Page
Preview
QC report experiment MPRAsnakeflow v0.3.0
quality control report
MPRAsnakeflow v0.3.0 experimemt workflow config file
computational protocol