IGVFDS2165KBMD

{
    "@context": "/terms/",
    "@id": "/analysis-sets/IGVFDS2165KBMD/",
    "@type": [
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        "FileSet",
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    ],
    "accession": "IGVFDS2165KBMD",
    "assay_titles": [
        "lentiMPRA"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization",
        "contact_pi": {
            "@id": "/users/eb543cda-67b7-493c-84eb-187d0dac13ba/",
            "title": "Jay Shendure"
        },
        "title": "Massively parallel characterization of variants and elements impacting transcriptional regulation in dynamic cellular systems"
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    "control_for": [],
    "creation_timestamp": "2024-11-27T13:00:30.527143+00:00",
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    ],
    "donors": [
        {
            "@id": "/human-donors/IGVFDO7918LJOI/",
            "accession": "IGVFDO7918LJOI",
            "sex": "unspecified",
            "status": "released",
            "taxa": "Homo sapiens"
        }
    ],
    "file_set_type": "principal analysis",
    "files": [
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            "@id": "/tabular-files/IGVFFI7367TYXG/",
            "accession": "IGVFFI7367TYXG",
            "content_type": "reporter experiment",
            "controlled_access": false,
            "creation_timestamp": "2024-11-27T13:10:47.594216+00:00",
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            "status": "released",
            "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/mprasnakeflow/results/experiment/reporter_experiment.oligo.neurons.defaultAssignment.default.min_oligo_threshold_10.tsv.gz\"",
            "upload_status": "validated"
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            "@id": "/tabular-files/IGVFFI3167QVNF/",
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            "content_type": "reporter experiment",
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            "upload_status": "validated"
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    ],
    "functional_assay_mechanisms": [],
    "input_file_sets": [
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            "@id": "/analysis-sets/IGVFDS0965BMDY/",
            "accession": "IGVFDS0965BMDY",
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            "status": "released"
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            "@id": "/auxiliary-sets/IGVFDS3325AHYB/",
            "accession": "IGVFDS3325AHYB",
            "file_set_type": "quantification DNA barcode sequencing",
            "status": "released"
        },
        {
            "@id": "/auxiliary-sets/IGVFDS0534ALXE/",
            "accession": "IGVFDS0534ALXE",
            "file_set_type": "quantification DNA barcode sequencing",
            "status": "released"
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        {
            "@id": "/auxiliary-sets/IGVFDS7143XIKJ/",
            "accession": "IGVFDS7143XIKJ",
            "file_set_type": "quantification DNA barcode sequencing",
            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS1253DLDL/",
            "accession": "IGVFDS1253DLDL",
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            "status": "released"
        },
        {
            "@id": "/measurement-sets/IGVFDS4302OZMS/",
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            "file_set_type": "experimental data",
            "status": "released"
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            "@id": "/measurement-sets/IGVFDS1673EWYY/",
            "accession": "IGVFDS1673EWYY",
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            "status": "released"
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    ],
    "input_for": [],
    "lab": {
        "@id": "/labs/nadav-ahituv/",
        "title": "Nadav Ahituv, UCSF"
    },
    "protocols": [
        "https://www.protocols.io/view/massive-parallel-reporter-assay-mpra-kxygxpmkwl8j/v1"
    ],
    "release_timestamp": "2025-01-09T20:34:27.108354+00:00",
    "sample_summary": "neural progenitor cell pooled cell specimen, transfected with a reporter library",
    "samples": [
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            "@id": "/in-vitro-systems/IGVFSM0720XHJA/",
            "@type": [
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            "classifications": [
                "pooled cell specimen"
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            ],
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                    ],
                    "status": "released",
                    "summary": "neural progenitor cell",
                    "term_name": "neural progenitor cell"
                }
            ],
            "status": "released",
            "summary": "neural progenitor pooled cell specimen, Homo sapiens transfected with a reporter library",
            "taxa": "Homo sapiens"
        }
    ],
    "schema_version": "9",
    "status": "released",
    "submitted_by": {
        "@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
        "title": "Max Schubach"
    },
    "submitted_files_timestamp": "2024-11-27T13:10:45.314240+00:00",
    "summary": "lentiMPRA: reporter experiment",
    "uuid": "42893360-d1ac-4a70-bd86-1c60e7109626",
    "workflows": [
        {
            "@id": "/workflows/IGVFWF6032PEGT/",
            "accession": "IGVFWF6032PEGT",
            "name": "MPRAsnakeflow",
            "status": "released",
            "uniform_pipeline": true
        }
    ]
}