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INDEXED
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AnalysisSet
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IGVFDS1501BSSU
IGVFDS1501BSSU
released
Json view
Aliases
ansuman-satpathy:igvf1_analysis_set_10x2
File Set Type
intermediate analysis
Summary
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Workflows
Satpathy Cell Ranger (IGVFWF1453HVEC)
Samples
Homo sapiens multiplexed sample of HAP-1, HL-60, HUDEP-2, K562, U2OS
Protocols
https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn
Files
5 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI0034FSXI
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.8 MB
validation exempted
IGVFFI0981BEOP
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
204 MB
validated
IGVFFI4750SIPG
tsv
fragments
fragments
Ansuman Satpathy, Stanford
4.0 GB
validation exempted
IGVFFI7329GRFD
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
445 KB
validated
IGVFFI9225UJLT
tbi
index
index of IGVFFI4750SIPG
Ansuman Satpathy, Stanford
1.5 MB
validated
File Association Graph
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File Set
File
AnalysisSet
AuxiliarySet
MeasurementSet
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM8645VILQ
MultiplexedSample
HAP-1
,
HL-60
,
HUDEP-2
,
K562
,
U2OS
multiplexed sample: Homo sapiens (male) HAP-1 cell line; Homo sapiens (male) HAP-1 cell line; ... and 13 more samples
Donors
5 items
Accession
Aliases
Sex
Taxa
IGVFDO0965QSBA
igvf:donor_of_HUDEP-2
unspecified
Homo sapiens
IGVFDO2115EOOA
igvf:donor_of_HL-60
female
Homo sapiens
IGVFDO2722UPGC
igvf:donor_of_HAP-1
male
Homo sapiens
IGVFDO9208RPQQ
igvf:donor_of_K562
female
Homo sapiens
IGVFDO9571CSNU
igvf:donor_of_U2OS
female
Homo sapiens
MeasurementSet Input File Sets
Show aliases columns
2 items
Measurement Sets
Measured Samples
Associated Auxiliary Sets
IGVFDS3169TEEK
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
IGVFSM8645VILQ
multiplexed sample: Homo sapiens (male) HAP-1 cell line; Homo sapiens (male) HAP-1 cell line; ... and 13 more samples
IGVFDS2200ZALZ
IGVFDS2684OSWL
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
IGVFSM8645VILQ
multiplexed sample: Homo sapiens (male) HAP-1 cell line; Homo sapiens (male) HAP-1 cell line; ... and 13 more samples
IGVFDS2200ZALZ
AuxiliarySet Input File Sets
Show aliases columns
1 item
Auxiliary Sets
Measured Samples
Associated Measurement Sets
IGVFDS2200ZALZ
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
IGVFSM8645VILQ
multiplexed sample: Homo sapiens (male) HAP-1 cell line; Homo sapiens (male) HAP-1 cell line; ... and 13 more samples
IGVFDS3169TEEK
IGVFDS2684OSWL
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford