{
"@context": "/terms/",
"@id": "/analysis-sets/IGVFDS1501BSSU/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1501BSSU",
"aliases": [
"ansuman-satpathy:igvf1_analysis_set_10x2"
],
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI0981BEOP](/matrix-files/IGVFFI0981BEOP/) has in progress subobject sequence file [IGVFFI0605ORIY](/sequence-files/IGVFFI0605ORIY/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI0981BEOP/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI0981BEOP](/matrix-files/IGVFFI0981BEOP/) has in progress subobject sequence file [IGVFFI2202GIPC](/sequence-files/IGVFFI2202GIPC/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI0981BEOP/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI0981BEOP](/matrix-files/IGVFFI0981BEOP/) has in progress subobject sequence file [IGVFFI5809HGKP](/sequence-files/IGVFFI5809HGKP/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI0981BEOP/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI0981BEOP](/matrix-files/IGVFFI0981BEOP/) has in progress subobject sequence file [IGVFFI0877NKND](/sequence-files/IGVFFI0877NKND/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI0981BEOP/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI0981BEOP](/matrix-files/IGVFFI0981BEOP/) has in progress subobject sequence file [IGVFFI5567DOCL](/sequence-files/IGVFFI5567DOCL/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI0981BEOP/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI0981BEOP](/matrix-files/IGVFFI0981BEOP/) has in progress subobject sequence file [IGVFFI7090WVNY](/sequence-files/IGVFFI7090WVNY/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI0981BEOP/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI0981BEOP](/matrix-files/IGVFFI0981BEOP/) has in progress subobject sequence file [IGVFFI0339ZACP](/sequence-files/IGVFFI0339ZACP/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI0981BEOP/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI0981BEOP](/matrix-files/IGVFFI0981BEOP/) has in progress subobject reference file [IGVFFI3944QOJF](/reference-files/IGVFFI3944QOJF/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI0981BEOP/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI0981BEOP](/matrix-files/IGVFFI0981BEOP/) has in progress subobject sequence file [IGVFFI8903GQTU](/sequence-files/IGVFFI8903GQTU/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI0981BEOP/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI0981BEOP](/matrix-files/IGVFFI0981BEOP/) has in progress subobject reference file [IGVFFI8311QXYM](/reference-files/IGVFFI8311QXYM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI0981BEOP/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI7329GRFD](/tabular-files/IGVFFI7329GRFD/) has in progress subobject sequence file [IGVFFI8424ARGP](/sequence-files/IGVFFI8424ARGP/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI7329GRFD/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI7329GRFD](/tabular-files/IGVFFI7329GRFD/) has in progress subobject sequence file [IGVFFI7041QHWA](/sequence-files/IGVFFI7041QHWA/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI7329GRFD/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI7329GRFD](/tabular-files/IGVFFI7329GRFD/) has in progress subobject sequence file [IGVFFI4210CZFC](/sequence-files/IGVFFI4210CZFC/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI7329GRFD/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI7329GRFD](/tabular-files/IGVFFI7329GRFD/) has in progress subobject sequence file [IGVFFI2699QLXS](/sequence-files/IGVFFI2699QLXS/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI7329GRFD/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI7329GRFD](/tabular-files/IGVFFI7329GRFD/) has in progress subobject sequence file [IGVFFI8711PJIQ](/sequence-files/IGVFFI8711PJIQ/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI7329GRFD/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI7329GRFD](/tabular-files/IGVFFI7329GRFD/) has in progress subobject sequence file [IGVFFI0365IOUE](/sequence-files/IGVFFI0365IOUE/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI7329GRFD/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI7329GRFD](/tabular-files/IGVFFI7329GRFD/) has in progress subobject sequence file [IGVFFI4624DTJY](/sequence-files/IGVFFI4624DTJY/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI7329GRFD/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI7329GRFD](/tabular-files/IGVFFI7329GRFD/) has in progress subobject sequence file [IGVFFI7586RXXZ](/sequence-files/IGVFFI7586RXXZ/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI7329GRFD/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM8645VILQ](/multiplexed-samples/IGVFSM8645VILQ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM8645VILQ/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI4750SIPG](/tabular-files/IGVFFI4750SIPG/) has in progress subobject sequence file [IGVFFI7273QKAQ](/sequence-files/IGVFFI7273QKAQ/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI4750SIPG/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI4750SIPG](/tabular-files/IGVFFI4750SIPG/) has in progress subobject sequence file [IGVFFI0660RPDV](/sequence-files/IGVFFI0660RPDV/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI4750SIPG/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI4750SIPG](/tabular-files/IGVFFI4750SIPG/) has in progress subobject sequence file [IGVFFI4807KWFS](/sequence-files/IGVFFI4807KWFS/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI4750SIPG/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI4750SIPG](/tabular-files/IGVFFI4750SIPG/) has in progress subobject sequence file [IGVFFI5304CPDI](/sequence-files/IGVFFI5304CPDI/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI4750SIPG/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI4750SIPG](/tabular-files/IGVFFI4750SIPG/) has in progress subobject sequence file [IGVFFI0737RLFI](/sequence-files/IGVFFI0737RLFI/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI4750SIPG/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI4750SIPG](/tabular-files/IGVFFI4750SIPG/) has in progress subobject sequence file [IGVFFI8458QQVB](/sequence-files/IGVFFI8458QQVB/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI4750SIPG/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI4750SIPG](/tabular-files/IGVFFI4750SIPG/) has in progress subobject sequence file [IGVFFI4221MLSD](/sequence-files/IGVFFI4221MLSD/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI4750SIPG/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI4750SIPG](/tabular-files/IGVFFI4750SIPG/) has in progress subobject sequence file [IGVFFI3023ETQK](/sequence-files/IGVFFI3023ETQK/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI4750SIPG/"
},
{
"category": "mismatched status",
"detail": "Released human donor [IGVFDO2115EOOA](/human-donors/IGVFDO2115EOOA/) has in progress subobject publication [6269453b-5ac0-4651-8b89-3169466cba2b](/publications/6269453b-5ac0-4651-8b89-3169466cba2b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO2115EOOA/"
},
{
"category": "mismatched status",
"detail": "Released human donor [IGVFDO9571CSNU](/human-donors/IGVFDO9571CSNU/) has in progress subobject publication [91850f8e-153a-43d6-9967-9afa98ec006a](/publications/91850f8e-153a-43d6-9967-9afa98ec006a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9571CSNU/"
},
{
"category": "missing demultiplexed sample",
"detail": "Analysis set [IGVFDS1501BSSU](/analysis-sets/IGVFDS1501BSSU/) has `input_file_sets` with multiplexed samples: [IGVFSM8645VILQ](/multiplexed-samples/IGVFSM8645VILQ/) but no `demultiplexed_sample`. Analysis sets with multiplexed samples are expected to specify a demultiplexed sample.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_analysis_set_multiplexed_samples",
"path": "/analysis-sets/IGVFDS1501BSSU/"
},
{
"category": "missing publication",
"detail": "Analysis set [IGVFDS1501BSSU](/analysis-sets/IGVFDS1501BSSU/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/analysis-sets/IGVFDS1501BSSU/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
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"contact_pi": {
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},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
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"creation_timestamp": "2025-03-21T23:04:27.828863+00:00",
"data_use_limitation_summaries": [
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],
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{
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],
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"status": "released",
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},
{
"@id": "/human-donors/IGVFDO9571CSNU/",
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"igvf:donor_of_U2OS"
],
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},
{
"@id": "/human-donors/IGVFDO2115EOOA/",
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"igvf:donor_of_HL-60"
],
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"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2722UPGC/",
"accession": "IGVFDO2722UPGC",
"aliases": [
"igvf:donor_of_HAP-1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9208RPQQ/",
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"aliases": [
"igvf:donor_of_K562"
],
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"status": "released",
"taxa": "Homo sapiens"
}
],
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{
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},
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"@id": "/tabular-files/IGVFFI0034FSXI/",
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],
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"file_size": 1771705,
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},
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"@id": "/matrix-files/IGVFFI0981BEOP/",
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],
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},
{
"@id": "/tabular-files/IGVFFI4750SIPG/",
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],
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"file_size": 4048332324,
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},
{
"@id": "/index-files/IGVFFI9225UJLT/",
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],
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"upload_status": "validated"
}
],
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"input_file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS2200ZALZ/",
"accession": "IGVFDS2200ZALZ",
"aliases": [
"ansuman-satpathy:multiseq_igvf1_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS2684OSWL/",
"accession": "IGVFDS2684OSWL",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf1_10x2"
],
"file_set_type": "experimental data",
"status": "released"
},
{
"@id": "/measurement-sets/IGVFDS3169TEEK/",
"accession": "IGVFDS3169TEEK",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf1_10x2"
],
"file_set_type": "experimental data",
"status": "released"
}
],
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"lab": {
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"title": "Ansuman Satpathy, Stanford"
},
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-22T00:42:16.349456+00:00",
"sample_summary": "Homo sapiens multiplexed sample of HAP-1, HL-60, HUDEP-2, K562, U2OS",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM8645VILQ/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM8645VILQ",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf1_10x2"
],
"classifications": [
"cell line",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [
{
"@id": "/institutional-certificates/16883984-b168-4b68-bc2a-37ef58354571/",
"certificate_identifier": "IP115-04",
"controlled_access": false,
"status": "released"
},
{
"@id": "/institutional-certificates/53fbaed7-f4c0-4932-bf77-254568743089/",
"certificate_identifier": "IP115-10",
"controlled_access": false,
"status": "released"
},
{
"@id": "/institutional-certificates/5e0fa625-6c72-4f32-872e-bcbc6acf630b/",
"certificate_identifier": "IP115-17",
"controlled_access": false,
"status": "released"
},
{
"@id": "/institutional-certificates/8ef1d59e-ef62-4890-b0ea-086d37645c75/",
"certificate_identifier": "IP115-02",
"controlled_access": false,
"status": "released"
},
{
"@id": "/institutional-certificates/d997512b-2c33-48e5-ae36-a94fd2959427/",
"certificate_identifier": "IP115-19",
"controlled_access": false,
"status": "released"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002067/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:K562"
],
"status": "released",
"summary": "K562",
"term_name": "K562"
},
{
"@id": "/sample-terms/EFO_0002793/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HL-60"
],
"status": "released",
"summary": "HL-60",
"term_name": "HL-60"
},
{
"@id": "/sample-terms/EFO_0002869/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:U2OS"
],
"status": "released",
"summary": "U2OS",
"term_name": "U2OS"
},
{
"@id": "/sample-terms/EFO_0007598/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HAP-1"
],
"status": "released",
"summary": "HAP-1",
"term_name": "HAP-1"
},
{
"@id": "/sample-terms/EFO_0022838/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HUDEP-2"
],
"status": "released",
"summary": "HUDEP-2",
"term_name": "HUDEP-2"
}
],
"status": "released",
"summary": "multiplexed sample: Homo sapiens (male) HAP-1 cell line; Homo sapiens (male) HAP-1 cell line; ... and 13 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "9",
"status": "released",
"submitted_by": {
"@id": "/users/6667a92a-d202-493a-8c7d-7a56d1380356/",
"title": "Khine Lin"
},
"submitted_files_timestamp": "2025-01-28T05:49:12.765264+00:00",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix",
"uuid": "9d3a59d0-353f-4e62-bbfa-70cab89f340c",
"workflows": [
{
"@id": "/workflows/IGVFWF1453HVEC/",
"accession": "IGVFWF1453HVEC",
"name": "Satpathy Cell Ranger",
"status": "released",
"uniform_pipeline": false
}
]
}