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INDEXED
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AnalysisSet
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IGVFDS0237MRDL
IGVFDS0237MRDL
released
Json view
Aliases
buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set
File Set Type
intermediate analysis
Summary
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
Samples
Mus musculus colon primary cell
Protocols
https://www.protocols.io/view/share-seq-v1-6qpvrdexpgmk/v1
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Files
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Workflow
Uniform Pipeline
Upload Status
IGVFFI0855DXJQ
tsv
fragments
fragments
Jason Buenrostro, Broad
4.9 GB
SHARE-seq-alignmentV2
validated
IGVFFI5632PBRO
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
111 MB
SHARE-seq-alignmentV2
validated
File Association Graph
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File Set
File
AnalysisSet
MeasurementSet
Samples
5 items
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM0332KRWE
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
IGVFSM0354RWOF
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
IGVFSM1242TZJM
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
IGVFSM4720VFLQ
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
IGVFSM7017UXAA
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
Donors
23 items
1
2
3
Accession
Aliases
Sex
Taxa
IGVFDO0860UBPI
buenrostro-bernstein:surya-DSS15-Control-m5
unspecified
Mus musculus
IGVFDO0874UTHD
buenrostro-bernstein:surya-DSS04-DSS-m1
unspecified
Mus musculus
IGVFDO0902NXCE
buenrostro-bernstein:surya-DSS15-DSS-m4
unspecified
Mus musculus
IGVFDO0997UHAO
buenrostro-bernstein:surya-DSS05-Control-m3
unspecified
Mus musculus
IGVFDO1782CWBW
buenrostro-bernstein:surya-DSS18-Control-m3
unspecified
Mus musculus
IGVFDO1905EGPL
buenrostro-bernstein:surya-DSS04-Control-m4
unspecified
Mus musculus
IGVFDO2984VHVD
buenrostro-bernstein:surya-DSS16-DSS-m1
unspecified
Mus musculus
IGVFDO3340XHFP
buenrostro-bernstein:surya-DSS15-DSS-m2
unspecified
Mus musculus
IGVFDO3717FOSD
buenrostro-bernstein:surya-DSS17-DSS-m1
unspecified
Mus musculus
IGVFDO4534AFBQ
buenrostro-bernstein:surya-DSS04-Control-m5
unspecified
Mus musculus
MeasurementSet Input File Sets
Show aliases columns
24 items
1
2
3
Measurement Sets
Measured Samples
IGVFDS6417ZIEI
single-cell ATAC-seq (SHARE-seq)
IGVFSM0332KRWE
Mus musculus C57BL/6J colon cell
IGVFDS9711DZFS
single-cell ATAC-seq (SHARE-seq)
IGVFSM4720VFLQ
Mus musculus C57BL/6J colon cell
IGVFDS0463BASV
single-cell ATAC-seq (SHARE-seq)
IGVFSM4720VFLQ
Mus musculus C57BL/6J colon cell
IGVFDS6298OKGJ
single-cell ATAC-seq (SHARE-seq)
IGVFSM0354RWOF
Mus musculus C57BL/6J colon cell
IGVFDS7425QRXB
single-cell ATAC-seq (SHARE-seq)
IGVFSM1242TZJM
Mus musculus C57BL/6J colon cell
IGVFDS3212RENM
single-cell ATAC-seq (SHARE-seq)
IGVFSM7017UXAA
Mus musculus C57BL/6J colon cell
IGVFDS9364TNAM
single-cell ATAC-seq (SHARE-seq)
IGVFSM0354RWOF
Mus musculus C57BL/6J colon cell
IGVFDS3861CXLU
single-cell ATAC-seq (SHARE-seq)
IGVFSM0354RWOF
Mus musculus C57BL/6J colon cell
IGVFDS5627HIFZ
single-cell ATAC-seq (SHARE-seq)
IGVFSM0332KRWE
Mus musculus C57BL/6J colon cell
IGVFDS1680VACI
single-cell ATAC-seq (SHARE-seq)
IGVFSM7017UXAA
Mus musculus C57BL/6J colon cell