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INDEXED
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AnalysisSet
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IGVFDS0237MRDL
IGVFDS0237MRDL
released
Json view
Aliases
buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set
File Set Type
intermediate analysis
Summary
SHARE-seq: fragments, sparse gene count matrix
Workflows
SHARE-seq-alignmentV2 (IGVFWF0507XZOR)
Samples
Mus musculus colon primary cell
Protocols
https://www.protocols.io/view/share-seq-v1-6qpvrdexpgmk/v1
Files
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI0855DXJQ
tsv
fragments
fragments
Jason Buenrostro, Broad
4.9 GB
validated
IGVFFI5632PBRO
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
111 MB
validated
File Association Graph
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File Set
File
AnalysisSet
MeasurementSet
Samples
5 items
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM0332KRWE
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
IGVFSM0354RWOF
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
IGVFSM1242TZJM
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
IGVFSM4720VFLQ
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
IGVFSM7017UXAA
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
Donors
23 items
1
2
3
Accession
Aliases
Sex
Taxa
IGVFDO0860UBPI
buenrostro-bernstein:surya-DSS15-Control-m5
unspecified
Mus musculus
IGVFDO0874UTHD
buenrostro-bernstein:surya-DSS04-DSS-m1
unspecified
Mus musculus
IGVFDO0902NXCE
buenrostro-bernstein:surya-DSS15-DSS-m4
unspecified
Mus musculus
IGVFDO0997UHAO
buenrostro-bernstein:surya-DSS05-Control-m3
unspecified
Mus musculus
IGVFDO1782CWBW
buenrostro-bernstein:surya-DSS18-Control-m3
unspecified
Mus musculus
IGVFDO1905EGPL
buenrostro-bernstein:surya-DSS04-Control-m4
unspecified
Mus musculus
IGVFDO2984VHVD
buenrostro-bernstein:surya-DSS16-DSS-m1
unspecified
Mus musculus
IGVFDO3340XHFP
buenrostro-bernstein:surya-DSS15-DSS-m2
unspecified
Mus musculus
IGVFDO3717FOSD
buenrostro-bernstein:surya-DSS17-DSS-m1
unspecified
Mus musculus
IGVFDO4534AFBQ
buenrostro-bernstein:surya-DSS04-Control-m5
unspecified
Mus musculus
MeasurementSet Input File Sets
Show aliases columns
24 items
1
2
3
Measurement Sets
Measured Samples
IGVFDS6417ZIEI
single-cell ATAC-seq (SHARE-seq)
IGVFSM0332KRWE
Mus musculus C57BL/6J colon cell
IGVFDS9711DZFS
single-cell ATAC-seq (SHARE-seq)
IGVFSM4720VFLQ
Mus musculus C57BL/6J colon cell
IGVFDS0463BASV
single-cell ATAC-seq (SHARE-seq)
IGVFSM4720VFLQ
Mus musculus C57BL/6J colon cell
IGVFDS6298OKGJ
single-cell ATAC-seq (SHARE-seq)
IGVFSM0354RWOF
Mus musculus C57BL/6J colon cell
IGVFDS7425QRXB
single-cell ATAC-seq (SHARE-seq)
IGVFSM1242TZJM
Mus musculus C57BL/6J colon cell
IGVFDS3212RENM
single-cell ATAC-seq (SHARE-seq)
IGVFSM7017UXAA
Mus musculus C57BL/6J colon cell
IGVFDS9364TNAM
single-cell ATAC-seq (SHARE-seq)
IGVFSM0354RWOF
Mus musculus C57BL/6J colon cell
IGVFDS3861CXLU
single-cell ATAC-seq (SHARE-seq)
IGVFSM0354RWOF
Mus musculus C57BL/6J colon cell
IGVFDS5627HIFZ
single-cell ATAC-seq (SHARE-seq)
IGVFSM0332KRWE
Mus musculus C57BL/6J colon cell
IGVFDS1680VACI
single-cell ATAC-seq (SHARE-seq)
IGVFSM7017UXAA
Mus musculus C57BL/6J colon cell
Attribution
Award
HG011986
Principal Investigator(s)
Bradley Bernstein
,
Jason Buenrostro
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad