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IGVFDS0237MRDL

released
Aliases
buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set
File Set Type
intermediate analysis
Summary
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq): fragments, sparse gene count matrix
Workflows
Samples
Mus musculus colon primary cell
Protocols
Attribution
Jason Buenrostro, Broad

Files

2 items
tsv
fragments
fragments
Jason Buenrostro, Broad
4.9 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
111 MB
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

5 items
Sample Terms
Associated Construct Library Sets
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell
PrimaryCell
Mus musculus C57BL/6J colon cell
PrimaryCell
Mus musculus C57BL/6J colon cell
PrimaryCell
Mus musculus C57BL/6J colon cell
PrimaryCell
Mus musculus C57BL/6J colon cell

Donors

23 items
Aliases
  • buenrostro-bernstein:surya-DSS15-Control-m5
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS04-DSS-m1
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS15-DSS-m4
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS05-Control-m3
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS18-Control-m3
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS04-Control-m4
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS16-DSS-m1
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS15-DSS-m2
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS17-DSS-m1
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS04-Control-m5
unspecified
Mus musculus

MeasurementSet Input File Sets

24 items
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colon cell
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colon cell
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colon cell
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colon cell
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colon cell
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colon cell
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colon cell
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colon cell
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colon cell
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6J colon cell