IGVFDS0237MRDL

released
1{
2    "@context": "/terms/",
3    "@id": "/analysis-sets/IGVFDS0237MRDL/",
4    "@type": [
5        "AnalysisSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS0237MRDL",
10    "aliases": [
11        "buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {
17        "INTERNAL_ACTION": [
18            {
19                "category": "missing publication",
20                "detail": "Primary cell [IGVFSM1242TZJM](/primary-cells/IGVFSM1242TZJM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
21                "level": 30,
22                "level_name": "INTERNAL_ACTION",
23                "name": "audit_sample_missing_publication",
24                "path": "/primary-cells/IGVFSM1242TZJM/"
25            },
26            {
27                "category": "missing publication",
28                "detail": "Primary cell [IGVFSM0354RWOF](/primary-cells/IGVFSM0354RWOF/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
29                "level": 30,
30                "level_name": "INTERNAL_ACTION",
31                "name": "audit_sample_missing_publication",
32                "path": "/primary-cells/IGVFSM0354RWOF/"
33            },
34            {
35                "category": "missing publication",
36                "detail": "Analysis set [IGVFDS0237MRDL](/analysis-sets/IGVFDS0237MRDL/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
37                "level": 30,
38                "level_name": "INTERNAL_ACTION",
39                "name": "audit_file_set_missing_publication",
40                "path": "/analysis-sets/IGVFDS0237MRDL/"
41            },
42            {
43                "category": "missing publication",
44                "detail": "Primary cell [IGVFSM7017UXAA](/primary-cells/IGVFSM7017UXAA/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
45                "level": 30,
46                "level_name": "INTERNAL_ACTION",
47                "name": "audit_sample_missing_publication",
48                "path": "/primary-cells/IGVFSM7017UXAA/"
49            },
50            {
51                "category": "missing publication",
52                "detail": "Primary cell [IGVFSM4720VFLQ](/primary-cells/IGVFSM4720VFLQ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
53                "level": 30,
54                "level_name": "INTERNAL_ACTION",
55                "name": "audit_sample_missing_publication",
56                "path": "/primary-cells/IGVFSM4720VFLQ/"
57            },
58            {
59                "category": "missing publication",
60                "detail": "Primary cell [IGVFSM0332KRWE](/primary-cells/IGVFSM0332KRWE/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
61                "level": 30,
62                "level_name": "INTERNAL_ACTION",
63                "name": "audit_sample_missing_publication",
64                "path": "/primary-cells/IGVFSM0332KRWE/"
65            },
66            {
67                "category": "mismatched status",
68                "detail": "Released matrix file [IGVFFI5632PBRO](/matrix-files/IGVFFI5632PBRO/) has in progress subobject reference file [IGVFFI4319MSMI](/reference-files/IGVFFI4319MSMI/).",
69                "level": 30,
70                "level_name": "INTERNAL_ACTION",
71                "name": "audit_item_status",
72                "path": "/matrix-files/IGVFFI5632PBRO/"
73            },
74            {
75                "category": "mismatched status",
76                "detail": "Released matrix file [IGVFFI5632PBRO](/matrix-files/IGVFFI5632PBRO/) has in progress subobject reference file [IGVFFI6909ZBPJ](/reference-files/IGVFFI6909ZBPJ/).",
77                "level": 30,
78                "level_name": "INTERNAL_ACTION",
79                "name": "audit_item_status",
80                "path": "/matrix-files/IGVFFI5632PBRO/"
81            }
82        ],
83        "WARNING": [
84            {
85                "category": "missing age",
86                "detail": "Primary cell [IGVFSM1242TZJM](/primary-cells/IGVFSM1242TZJM/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
87                "level": 40,
88                "level_name": "WARNING",
89                "name": "audit_biosample_age",
90                "path": "/primary-cells/IGVFSM1242TZJM/"
91            },
92            {
93                "category": "missing age",
94                "detail": "Primary cell [IGVFSM0354RWOF](/primary-cells/IGVFSM0354RWOF/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
95                "level": 40,
96                "level_name": "WARNING",
97                "name": "audit_biosample_age",
98                "path": "/primary-cells/IGVFSM0354RWOF/"
99            },
100            {
101                "category": "missing age",
102                "detail": "Primary cell [IGVFSM7017UXAA](/primary-cells/IGVFSM7017UXAA/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
103                "level": 40,
104                "level_name": "WARNING",
105                "name": "audit_biosample_age",
106                "path": "/primary-cells/IGVFSM7017UXAA/"
107            },
108            {
109                "category": "missing age",
110                "detail": "Primary cell [IGVFSM4720VFLQ](/primary-cells/IGVFSM4720VFLQ/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
111                "level": 40,
112                "level_name": "WARNING",
113                "name": "audit_biosample_age",
114                "path": "/primary-cells/IGVFSM4720VFLQ/"
115            },
116            {
117                "category": "missing age",
118                "detail": "Primary cell [IGVFSM0332KRWE](/primary-cells/IGVFSM0332KRWE/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
119                "level": 40,
120                "level_name": "WARNING",
121                "name": "audit_biosample_age",
122                "path": "/primary-cells/IGVFSM0332KRWE/"
123            }
124        ]
125    },
126    "award": {
127        "@id": "/awards/HG011986/",
128        "component": "mapping",
129        "contact_pi": {
130            "@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
131            "title": "Jason Buenrostro"
132        },
133        "title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
134    },
135    "control_for": [],
136    "creation_timestamp": "2025-03-06T15:38:51.792963+00:00",
137    "donors": [
138        {
139            "@id": "/rodent-donors/IGVFDO4534AFBQ/",
140            "accession": "IGVFDO4534AFBQ",
141            "aliases": [
142                "buenrostro-bernstein:surya-DSS04-Control-m5"
143            ],
144            "sex": "unspecified",
145            "status": "released",
146            "taxa": "Mus musculus"
147        },
148        {
149            "@id": "/rodent-donors/IGVFDO0997UHAO/",
150            "accession": "IGVFDO0997UHAO",
151            "aliases": [
152                "buenrostro-bernstein:surya-DSS05-Control-m3"
153            ],
154            "sex": "unspecified",
155            "status": "released",
156            "taxa": "Mus musculus"
157        },
158        {
159            "@id": "/rodent-donors/IGVFDO0902NXCE/",
160            "accession": "IGVFDO0902NXCE",
161            "aliases": [
162                "buenrostro-bernstein:surya-DSS15-DSS-m4"
163            ],
164            "sex": "unspecified",
165            "status": "released",
166            "taxa": "Mus musculus"
167        },
168        {
169            "@id": "/rodent-donors/IGVFDO8998VZHS/",
170            "accession": "IGVFDO8998VZHS",
171            "aliases": [
172                "buenrostro-bernstein:surya-DSS15-DSS-m1"
173            ],
174            "sex": "unspecified",
175            "status": "released",
176            "taxa": "Mus musculus"
177        },
178        {
179            "@id": "/rodent-donors/IGVFDO2984VHVD/",
180            "accession": "IGVFDO2984VHVD",
181            "aliases": [
182                "buenrostro-bernstein:surya-DSS16-DSS-m1"
183            ],
184            "sex": "unspecified",
185            "status": "released",
186            "taxa": "Mus musculus"
187        },
188        {
189            "@id": "/rodent-donors/IGVFDO9324UYNE/",
190            "accession": "IGVFDO9324UYNE",
191            "aliases": [
192                "buenrostro-bernstein:surya-DSS17-DSS-m2"
193            ],
194            "sex": "unspecified",
195            "status": "released",
196            "taxa": "Mus musculus"
197        },
198        {
199            "@id": "/rodent-donors/IGVFDO0860UBPI/",
200            "accession": "IGVFDO0860UBPI",
201            "aliases": [
202                "buenrostro-bernstein:surya-DSS15-Control-m5"
203            ],
204            "sex": "unspecified",
205            "status": "released",
206            "taxa": "Mus musculus"
207        },
208        {
209            "@id": "/rodent-donors/IGVFDO5001DPQO/",
210            "accession": "IGVFDO5001DPQO",
211            "aliases": [
212                "buenrostro-bernstein:surya-DSS16-Control-m3"
213            ],
214            "sex": "unspecified",
215            "status": "released",
216            "taxa": "Mus musculus"
217        },
218        {
219            "@id": "/rodent-donors/IGVFDO3717FOSD/",
220            "accession": "IGVFDO3717FOSD",
221            "aliases": [
222                "buenrostro-bernstein:surya-DSS17-DSS-m1"
223            ],
224            "sex": "unspecified",
225            "status": "released",
226            "taxa": "Mus musculus"
227        },
228        {
229            "@id": "/rodent-donors/IGVFDO6702IDOE/",
230            "accession": "IGVFDO6702IDOE",
231            "aliases": [
232                "buenrostro-bernstein:surya-DSS04-DSS-m2"
233            ],
234            "sex": "unspecified",
235            "status": "released",
236            "taxa": "Mus musculus"
237        },
238        {
239            "@id": "/rodent-donors/IGVFDO4795UJTB/",
240            "accession": "IGVFDO4795UJTB",
241            "aliases": [
242                "buenrostro-bernstein:surya-DSS05-Control-m4"
243            ],
244            "sex": "unspecified",
245            "status": "released",
246            "taxa": "Mus musculus"
247        },
248        {
249            "@id": "/rodent-donors/IGVFDO0874UTHD/",
250            "accession": "IGVFDO0874UTHD",
251            "aliases": [
252                "buenrostro-bernstein:surya-DSS04-DSS-m1"
253            ],
254            "sex": "unspecified",
255            "status": "released",
256            "taxa": "Mus musculus"
257        },
258        {
259            "@id": "/rodent-donors/IGVFDO1782CWBW/",
260            "accession": "IGVFDO1782CWBW",
261            "aliases": [
262                "buenrostro-bernstein:surya-DSS18-Control-m3"
263            ],
264            "sex": "unspecified",
265            "status": "released",
266            "taxa": "Mus musculus"
267        },
268        {
269            "@id": "/rodent-donors/IGVFDO9911FTUN/",
270            "accession": "IGVFDO9911FTUN",
271            "aliases": [
272                "buenrostro-bernstein:surya-DSS18-DSS-m1"
273            ],
274            "sex": "unspecified",
275            "status": "released",
276            "taxa": "Mus musculus"
277        },
278        {
279            "@id": "/rodent-donors/IGVFDO4820BFGB/",
280            "accession": "IGVFDO4820BFGB",
281            "aliases": [
282                "buenrostro-bernstein:surya-DSS18-DSS-m2"
283            ],
284            "sex": "unspecified",
285            "status": "released",
286            "taxa": "Mus musculus"
287        },
288        {
289            "@id": "/rodent-donors/IGVFDO3340XHFP/",
290            "accession": "IGVFDO3340XHFP",
291            "aliases": [
292                "buenrostro-bernstein:surya-DSS15-DSS-m2"
293            ],
294            "sex": "unspecified",
295            "status": "released",
296            "taxa": "Mus musculus"
297        },
298        {
299            "@id": "/rodent-donors/IGVFDO4865EMFK/",
300            "accession": "IGVFDO4865EMFK",
301            "aliases": [
302                "buenrostro-bernstein:surya-DSS05-DSS-m2"
303            ],
304            "sex": "unspecified",
305            "status": "released",
306            "taxa": "Mus musculus"
307        },
308        {
309            "@id": "/rodent-donors/IGVFDO1905EGPL/",
310            "accession": "IGVFDO1905EGPL",
311            "aliases": [
312                "buenrostro-bernstein:surya-DSS04-Control-m4"
313            ],
314            "sex": "unspecified",
315            "status": "released",
316            "taxa": "Mus musculus"
317        },
318        {
319            "@id": "/rodent-donors/IGVFDO9526OTLM/",
320            "accession": "IGVFDO9526OTLM",
321            "aliases": [
322                "buenrostro-bernstein:surya-DSS05-DSS-m1"
323            ],
324            "sex": "unspecified",
325            "status": "released",
326            "taxa": "Mus musculus"
327        },
328        {
329            "@id": "/rodent-donors/IGVFDO4695LJXX/",
330            "accession": "IGVFDO4695LJXX",
331            "aliases": [
332                "buenrostro-bernstein:surya-DSS04-DSS-m3"
333            ],
334            "sex": "unspecified",
335            "status": "released",
336            "taxa": "Mus musculus"
337        },
338        {
339            "@id": "/rodent-donors/IGVFDO6000ECIY/",
340            "accession": "IGVFDO6000ECIY",
341            "aliases": [
342                "buenrostro-bernstein:surya-DSS16-DSS-m2"
343            ],
344            "sex": "unspecified",
345            "status": "released",
346            "taxa": "Mus musculus"
347        },
348        {
349            "@id": "/rodent-donors/IGVFDO5812DIRC/",
350            "accession": "IGVFDO5812DIRC",
351            "aliases": [
352                "buenrostro-bernstein:surya-DSS15-Control-m3"
353            ],
354            "sex": "unspecified",
355            "status": "released",
356            "taxa": "Mus musculus"
357        },
358        {
359            "@id": "/rodent-donors/IGVFDO7063RDKN/",
360            "accession": "IGVFDO7063RDKN",
361            "aliases": [
362                "buenrostro-bernstein:surya-DSS17-Control-m3"
363            ],
364            "sex": "unspecified",
365            "status": "released",
366            "taxa": "Mus musculus"
367        }
368    ],
369    "file_set_type": "intermediate analysis",
370    "files": [
371        {
372            "@id": "/matrix-files/IGVFFI5632PBRO/",
373            "accession": "IGVFFI5632PBRO",
374            "aliases": [
375                "buenrostro-bernstein:surya-mouse-colitis-tissue-rna-matrix"
376            ],
377            "content_type": "sparse gene count matrix",
378            "creation_timestamp": "2025-03-06T15:41:57.646914+00:00",
379            "file_format": "h5ad",
380            "file_size": 110725609,
381            "href": "/matrix-files/IGVFFI5632PBRO/@@download/IGVFFI5632PBRO.h5ad",
382            "s3_uri": "s3://igvf-files/2025/03/06/5b570cf3-3dc3-4149-b07c-5d622b87d59c/IGVFFI5632PBRO.h5ad",
383            "status": "released",
384            "submitted_file_name": "gs://sw-igvf-submission/surya-mouse-colitis/processed-data/mouse_colitis_tissue.RNA.raw_counts.h5",
385            "upload_status": "validated"
386        },
387        {
388            "@id": "/tabular-files/IGVFFI0855DXJQ/",
389            "accession": "IGVFFI0855DXJQ",
390            "aliases": [
391                "buenrostro-bernstein:surya-mouse-colitis-tissue-atac-frag"
392            ],
393            "content_type": "fragments",
394            "controlled_access": false,
395            "creation_timestamp": "2025-03-06T16:09:00.406626+00:00",
396            "file_format": "tsv",
397            "file_size": 4892935106,
398            "href": "/tabular-files/IGVFFI0855DXJQ/@@download/IGVFFI0855DXJQ.tsv.gz",
399            "s3_uri": "s3://igvf-files/2025/03/06/fbc348e2-50ed-4d4c-a0cf-bc1c047d59ce/IGVFFI0855DXJQ.tsv.gz",
400            "status": "released",
401            "submitted_file_name": "gs://sw-igvf-submission/surya-mouse-colitis/processed-data/mouse_colitis_tissue.ATAC.fragments.tsv.gz",
402            "upload_status": "validated"
403        }
404    ],
405    "functional_assay_mechanisms": [],
406    "input_file_sets": [
407        {
408            "@id": "/measurement-sets/IGVFDS4279AZHG/",
409            "accession": "IGVFDS4279AZHG",
410            "aliases": [
411                "buenrostro-bernstein:surya-mouse-colon_mm-set24"
412            ],
413            "file_set_type": "experimental data",
414            "status": "released"
415        },
416        {
417            "@id": "/measurement-sets/IGVFDS5841CMLA/",
418            "accession": "IGVFDS5841CMLA",
419            "aliases": [
420                "buenrostro-bernstein:surya-mouse-colon_mm-set14"
421            ],
422            "file_set_type": "experimental data",
423            "status": "released"
424        },
425        {
426            "@id": "/measurement-sets/IGVFDS9711DZFS/",
427            "accession": "IGVFDS9711DZFS",
428            "aliases": [
429                "buenrostro-bernstein:surya-mouse-colon_mm-set7"
430            ],
431            "file_set_type": "experimental data",
432            "status": "released"
433        },
434        {
435            "@id": "/measurement-sets/IGVFDS0463BASV/",
436            "accession": "IGVFDS0463BASV",
437            "aliases": [
438                "buenrostro-bernstein:surya-mouse-colon_mm-set8"
439            ],
440            "file_set_type": "experimental data",
441            "status": "released"
442        },
443        {
444            "@id": "/measurement-sets/IGVFDS8684IGUT/",
445            "accession": "IGVFDS8684IGUT",
446            "aliases": [
447                "buenrostro-bernstein:surya-mouse-colon_mm-set16"
448            ],
449            "file_set_type": "experimental data",
450            "status": "released"
451        },
452        {
453            "@id": "/measurement-sets/IGVFDS3890CXMU/",
454            "accession": "IGVFDS3890CXMU",
455            "aliases": [
456                "buenrostro-bernstein:surya-mouse-colon_mm-set19"
457            ],
458            "file_set_type": "experimental data",
459            "status": "released"
460        },
461        {
462            "@id": "/measurement-sets/IGVFDS6417ZIEI/",
463            "accession": "IGVFDS6417ZIEI",
464            "aliases": [
465                "buenrostro-bernstein:surya-mouse-colon_mm-set1"
466            ],
467            "file_set_type": "experimental data",
468            "status": "released"
469        },
470        {
471            "@id": "/measurement-sets/IGVFDS1815DBIG/",
472            "accession": "IGVFDS1815DBIG",
473            "aliases": [
474                "buenrostro-bernstein:surya-mouse-colon_mm-set15"
475            ],
476            "file_set_type": "experimental data",
477            "status": "released"
478        },
479        {
480            "@id": "/measurement-sets/IGVFDS4205JWPE/",
481            "accession": "IGVFDS4205JWPE",
482            "aliases": [
483                "buenrostro-bernstein:surya-mouse-colon_mm-set21"
484            ],
485            "file_set_type": "experimental data",
486            "status": "released"
487        },
488        {
489            "@id": "/measurement-sets/IGVFDS5960BAQO/",
490            "accession": "IGVFDS5960BAQO",
491            "aliases": [
492                "buenrostro-bernstein:surya-mouse-colon_mm-set2"
493            ],
494            "file_set_type": "experimental data",
495            "status": "released"
496        },
497        {
498            "@id": "/measurement-sets/IGVFDS3212RENM/",
499            "accession": "IGVFDS3212RENM",
500            "aliases": [
501                "buenrostro-bernstein:surya-mouse-colon_mm-set10"
502            ],
503            "file_set_type": "experimental data",
504            "status": "released"
505        },
506        {
507            "@id": "/measurement-sets/IGVFDS1130NULC/",
508            "accession": "IGVFDS1130NULC",
509            "aliases": [
510                "buenrostro-bernstein:surya-mouse-colon_mm-set22"
511            ],
512            "file_set_type": "experimental data",
513            "status": "released"
514        },
515        {
516            "@id": "/measurement-sets/IGVFDS5627HIFZ/",
517            "accession": "IGVFDS5627HIFZ",
518            "aliases": [
519                "buenrostro-bernstein:surya-mouse-colon_mm-set3"
520            ],
521            "file_set_type": "experimental data",
522            "status": "released"
523        },
524        {
525            "@id": "/measurement-sets/IGVFDS1680VACI/",
526            "accession": "IGVFDS1680VACI",
527            "aliases": [
528                "buenrostro-bernstein:surya-mouse-colon_mm-set9"
529            ],
530            "file_set_type": "experimental data",
531            "status": "released"
532        },
533        {
534            "@id": "/measurement-sets/IGVFDS6334KAGT/",
535            "accession": "IGVFDS6334KAGT",
536            "aliases": [
537                "buenrostro-bernstein:surya-mouse-colon_mm-set13"
538            ],
539            "file_set_type": "experimental data",
540            "status": "released"
541        },
542        {
543            "@id": "/measurement-sets/IGVFDS9896MQFE/",
544            "accession": "IGVFDS9896MQFE",
545            "aliases": [
546                "buenrostro-bernstein:surya-mouse-colon_mm-set12"
547            ],
548            "file_set_type": "experimental data",
549            "status": "released"
550        },
551        {
552            "@id": "/measurement-sets/IGVFDS6298OKGJ/",
553            "accession": "IGVFDS6298OKGJ",
554            "aliases": [
555                "buenrostro-bernstein:surya-mouse-colon_mm-set4"
556            ],
557            "file_set_type": "experimental data",
558            "status": "released"
559        },
560        {
561            "@id": "/measurement-sets/IGVFDS6729QWDJ/",
562            "accession": "IGVFDS6729QWDJ",
563            "aliases": [
564                "buenrostro-bernstein:surya-mouse-colon_mm-set18"
565            ],
566            "file_set_type": "experimental data",
567            "status": "released"
568        },
569        {
570            "@id": "/measurement-sets/IGVFDS9364TNAM/",
571            "accession": "IGVFDS9364TNAM",
572            "aliases": [
573                "buenrostro-bernstein:surya-mouse-colon_mm-set6"
574            ],
575            "file_set_type": "experimental data",
576            "status": "released"
577        },
578        {
579            "@id": "/measurement-sets/IGVFDS8974KOJW/",
580            "accession": "IGVFDS8974KOJW",
581            "aliases": [
582                "buenrostro-bernstein:surya-mouse-colon_mm-set23"
583            ],
584            "file_set_type": "experimental data",
585            "status": "released"
586        },
587        {
588            "@id": "/measurement-sets/IGVFDS3861CXLU/",
589            "accession": "IGVFDS3861CXLU",
590            "aliases": [
591                "buenrostro-bernstein:surya-mouse-colon_mm-set5"
592            ],
593            "file_set_type": "experimental data",
594            "status": "released"
595        },
596        {
597            "@id": "/measurement-sets/IGVFDS7425QRXB/",
598            "accession": "IGVFDS7425QRXB",
599            "aliases": [
600                "buenrostro-bernstein:surya-mouse-colon_mm-set11"
601            ],
602            "file_set_type": "experimental data",
603            "status": "released"
604        },
605        {
606            "@id": "/measurement-sets/IGVFDS6690HJKJ/",
607            "accession": "IGVFDS6690HJKJ",
608            "aliases": [
609                "buenrostro-bernstein:surya-mouse-colon_mm-set17"
610            ],
611            "file_set_type": "experimental data",
612            "status": "released"
613        },
614        {
615            "@id": "/measurement-sets/IGVFDS1670HEIT/",
616            "accession": "IGVFDS1670HEIT",
617            "aliases": [
618                "buenrostro-bernstein:surya-mouse-colon_mm-set20"
619            ],
620            "file_set_type": "experimental data",
621            "status": "released"
622        }
623    ],
624    "input_for": [],
625    "lab": {
626        "@id": "/labs/jason-buenrostro/",
627        "title": "Jason Buenrostro, Broad"
628    },
629    "protocols": [
630        "https://www.protocols.io/view/share-seq-v1-6qpvrdexpgmk/v1"
631    ],
632    "release_timestamp": "2025-03-26T19:25:51.751858+00:00",
633    "sample_summary": "Mus musculus colon primary cell",
634    "samples": [
635        {
636            "@id": "/primary-cells/IGVFSM1242TZJM/",
637            "@type": [
638                "PrimaryCell",
639                "Biosample",
640                "Sample",
641                "Item"
642            ],
643            "accession": "IGVFSM1242TZJM",
644            "aliases": [
645                "buenrostro-bernstein:surya-DSS17-DSS-m1 1_to_16, DSS17-DSS-m2 17_to_32, DSS17-Control-m3 33_to_48, DSS18-DSS-m1 49_to_64, DSS18-DSS-m2 65_to_80, DSS18-Control-m3 81_to_96"
646            ],
647            "classifications": [
648                "primary cell"
649            ],
650            "institutional_certificates": [],
651            "sample_terms": [
652                {
653                    "@id": "/sample-terms/UBERON_0001155/",
654                    "@type": [
655                        "SampleTerm",
656                        "OntologyTerm",
657                        "Item"
658                    ],
659                    "status": "released",
660                    "summary": "colon",
661                    "term_name": "colon"
662                }
663            ],
664            "status": "released",
665            "summary": "Mus musculus C57BL/6J colon cell",
666            "taxa": "Mus musculus"
667        },
668        {
669            "@id": "/primary-cells/IGVFSM0354RWOF/",
670            "@type": [
671                "PrimaryCell",
672                "Biosample",
673                "Sample",
674                "Item"
675            ],
676            "accession": "IGVFSM0354RWOF",
677            "aliases": [
678                "buenrostro-bernstein:surya-DSS05-DSS-m1 1_to_16, DSS05-DSS-m2 17_to_48, DSS05-Control-m3 49_to_80, DSS05-Control-m4 81_to_96"
679            ],
680            "classifications": [
681                "primary cell"
682            ],
683            "institutional_certificates": [],
684            "sample_terms": [
685                {
686                    "@id": "/sample-terms/UBERON_0001155/",
687                    "@type": [
688                        "SampleTerm",
689                        "OntologyTerm",
690                        "Item"
691                    ],
692                    "status": "released",
693                    "summary": "colon",
694                    "term_name": "colon"
695                }
696            ],
697            "status": "released",
698            "summary": "Mus musculus C57BL/6J colon cell",
699            "taxa": "Mus musculus"
700        },
701        {
702            "@id": "/primary-cells/IGVFSM4720VFLQ/",
703            "@type": [
704                "PrimaryCell",
705                "Biosample",
706                "Sample",
707                "Item"
708            ],
709            "accession": "IGVFSM4720VFLQ",
710            "aliases": [
711                "buenrostro-bernstein:surya-DSS15-DSS-m1 1_to_16, DSS15-DSS-m2 17_to_32, DSS15-DSS-m4 33_to_48, DSS15-Control-m3 49_to_80, DSS15-Control-m5 81_to_96"
712            ],
713            "classifications": [
714                "primary cell"
715            ],
716            "institutional_certificates": [],
717            "sample_terms": [
718                {
719                    "@id": "/sample-terms/UBERON_0001155/",
720                    "@type": [
721                        "SampleTerm",
722                        "OntologyTerm",
723                        "Item"
724                    ],
725                    "status": "released",
726                    "summary": "colon",
727                    "term_name": "colon"
728                }
729            ],
730            "status": "released",
731            "summary": "Mus musculus C57BL/6J colon cell",
732            "taxa": "Mus musculus"
733        },
734        {
735            "@id": "/primary-cells/IGVFSM7017UXAA/",
736            "@type": [
737                "PrimaryCell",
738                "Biosample",
739                "Sample",
740                "Item"
741            ],
742            "accession": "IGVFSM7017UXAA",
743            "aliases": [
744                "buenrostro-bernstein:surya-DSS16-DSS-m1 1_to_32, DSS16-DSS-m2 33_to_64, DSS16-Control-m3 65_to_96"
745            ],
746            "classifications": [
747                "primary cell"
748            ],
749            "institutional_certificates": [],
750            "sample_terms": [
751                {
752                    "@id": "/sample-terms/UBERON_0001155/",
753                    "@type": [
754                        "SampleTerm",
755                        "OntologyTerm",
756                        "Item"
757                    ],
758                    "status": "released",
759                    "summary": "colon",
760                    "term_name": "colon"
761                }
762            ],
763            "status": "released",
764            "summary": "Mus musculus C57BL/6J colon cell",
765            "taxa": "Mus musculus"
766        },
767        {
768            "@id": "/primary-cells/IGVFSM0332KRWE/",
769            "@type": [
770                "PrimaryCell",
771                "Biosample",
772                "Sample",
773                "Item"
774            ],
775            "accession": "IGVFSM0332KRWE",
776            "aliases": [
777                "buenrostro-bernstein:surya-DSS04-DSS-m1 1_to_16, DSS04-DSS-m2 17_to_32, DSS04-DSS-m3 33_to_56, DSS04-Control-m4 57_to_76, DSS04-Control-m5 77_to_96"
778            ],
779            "classifications": [
780                "primary cell"
781            ],
782            "institutional_certificates": [],
783            "sample_terms": [
784                {
785                    "@id": "/sample-terms/UBERON_0001155/",
786                    "@type": [
787                        "SampleTerm",
788                        "OntologyTerm",
789                        "Item"
790                    ],
791                    "status": "released",
792                    "summary": "colon",
793                    "term_name": "colon"
794                }
795            ],
796            "status": "released",
797            "summary": "Mus musculus C57BL/6J colon cell",
798            "taxa": "Mus musculus"
799        }
800    ],
801    "schema_version": "9",
802    "status": "released",
803    "submitted_by": {
804        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
805        "title": "Siddarth Wekhande"
806    },
807    "submitted_files_timestamp": "2025-03-06T15:41:57.646914+00:00",
808    "summary": "SHARE-seq: fragments, sparse gene count matrix",
809    "uuid": "5d1c7b4a-c440-45be-909b-46f6f2ec4ba4",
810    "workflows": [
811        {
812            "@id": "/workflows/IGVFWF0507XZOR/",
813            "accession": "IGVFWF0507XZOR",
814            "name": "SHARE-seq-alignmentV2",
815            "status": "released",
816            "uniform_pipeline": false
817        }
818    ]
819}