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IGVFFI9520OPSC

released
validated
File Set
IGVFDS6924DJJC(knockout RNA-seq: transcriptome alignments)
Summary
GRCh38 filtered transcriptome alignments
Analysis Step Version
/analysis-step-versions/7298947c-9675-4de2-933a-642bde562751/
File Format
bam
Content Type
transcriptome alignments
Content Summary
filtered transcriptome alignments
Aliases
charles-gersbach:cd8-tcells-rna-seq-cas-ko-nt-bam-rep2
md5sum
dfb0b5d0cbce0ebe7fdba5b78991c684
Content MD5sum
027e3eb410a48450b72f15f3e8471044
File Size
2.5 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8.rnaseq.pSM73.nt.d2.star2.Aligned.out.sorted.bam

Alignment Details

Reference Files
Filtered
True

Samples

3 items
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Files This File Derives From

2 items
fastq
reads
Charles Gersbach, Duke
2.5 GB
validated
fastq
reads
Charles Gersbach, Duke
2.7 GB
validated

Files Derived From This File

2 items
tsv
transcript quantifications
GRCh38 transcript quantifications
Charles Gersbach, Duke
547 KB
validated
tsv
transcript quantifications
GRCh38 transcript quantifications
Charles Gersbach, Duke
549 KB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke