IGVF

Click and hold a term momentarily to select items without that term.

168 items

AlignmentFile
IGVFFI3872NBHI
bam - unfiltered alignments
Jason Buenrostro, Broad
Content Summary
unfiltered alignments
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
AlignmentFile
IGVFFI0822LWRZ
bam - filtered transcriptome alignments
Charles Gersbach, Duke
Content Summary
filtered transcriptome alignments
AnalysisSe
RNA-seq integrating an expression vector library of BATF3 and a reference transduction expression vector library with reference transduction control
released
validated
AlignmentFile
IGVFFI7373KSGO
bam - unfiltered alignments
Tim Reddy, Duke
Content Summary
unfiltered alignments
AnalysisSe
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA18505, NA18909, NA18916, NA18923, NA19175
released
validated
AlignmentFile
IGVFFI4920WSOC
bam - unfiltered alignments
Jason Buenrostro, Broad
Content Summary
unfiltered alignments
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
AlignmentFile
IGVFFI1198PNDA
bam - filtered alignments
Charles Gersbach, Duke
Content Summary
filtered alignments
AnalysisSe
ATAC-seq integrating an expression vector library of BATF3 and a reference transduction expression vector library with reference transduction control
released
validated
AlignmentFile
IGVFFI1534IVYM
bam - filtered alignments
Charles Gersbach, Duke
Content Summary
filtered alignments
AnalysisSe
ATAC-seq with untreated control
released
validated
AlignmentFile
IGVFFI7067LDJI
bam - unfiltered alignments
Tim Reddy, Duke
Content Summary
unfiltered alignments
AnalysisSe
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA18861, NA18917, NA19198, NA19201, NA19206
released
validated
AlignmentFile
IGVFFI3650PMFD
bam - filtered transcriptome alignments
Charles Gersbach, Duke
Content Summary
filtered transcriptome alignments
AnalysisSe
RNA-seq integrating an expression vector library of BATF3 and a reference transduction expression vector library with reference transduction control
released
validated
AlignmentFile
IGVFFI7996HHYF
bam - unfiltered alignments
Charles Gersbach, Duke
Content Summary
unfiltered alignments
AnalysisSe
CRISPR activation FACS screen targeting IL2RA integrating a guide (sgRNA) library targeting transcription start sites in IL2RA with low FACS signal control
released
validated
AlignmentFile
IGVFFI3226VPNC
bam - unfiltered alignments
Tim Reddy, Duke
Content Summary
unfiltered alignments
AnalysisSe
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA19098, NA19113, NA19152, NA19171, NA19190
released
validated
AlignmentFile
IGVFFI0916WHTV
bam - unfiltered alignments
Charles Gersbach, Duke
Content Summary
unfiltered alignments
AnalysisSe
CRISPR interference FACS screen targeting B2M integrating a guide (sgRNA) library targeting transcription start sites in B2M with low FACS signal control
released
validated
AlignmentFile
IGVFFI8085KQXE
bam - unfiltered alignments
Tim Reddy, Duke
Content Summary
unfiltered alignments
AnalysisSe
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: HG02666, HG02771, HG02804, HG02811, HG02881
released
validated
AlignmentFile
IGVFFI1698LKKR
bam - unfiltered alignments
Jason Buenrostro, Broad
Content Summary
unfiltered alignments
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
AlignmentFile
IGVFFI7291IHIZ
bam - unfiltered alignments
Maya Kasowski, Stanford
Content Summary
unfiltered alignments
MeasurementSe
WGS
released
validated
AlignmentFile
IGVFFI8858NPQE
bam - unfiltered alignments
Tim Reddy, Duke
Content Summary
unfiltered alignments
AnalysisSe
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA18489, NA18908, NA18934, NA19095, NA19184
released
validated
AlignmentFile
IGVFFI4620BDRI
bam - unfiltered alignments
Maya Kasowski, Stanford
Content Summary
unfiltered alignments
MeasurementSe
WGS
released
validated
AlignmentFile
IGVFFI3234RYMD
bam - filtered transcriptome alignments
Charles Gersbach, Duke
Content Summary
filtered transcriptome alignments
AnalysisSe
CRISPR knockout RNA-seq integrating a guide (sgRNA) library targeting transcription start sites in ZNF217 and a non-targeting guide (sgRNA) library with non-targeting control
released
validated
AlignmentFile
IGVFFI6752WOMF
bam - unfiltered alignments
Charles Gersbach, Duke
Content Summary
unfiltered alignments
AnalysisSe
CRISPR interference FACS screen targeting CCR7 integrating a guide (sgRNA) library targeting transcription start sites in many genes with low FACS signal control
released
validated
AlignmentFile
IGVFFI5082ZFLQ
bam - unfiltered alignments
Tim Reddy, Duke
Content Summary
unfiltered alignments
AnalysisSe
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA19108, NA19141, NA19146, NA19204, NA19235
released
validated
AlignmentFile
IGVFFI9383VIBN
bam - unfiltered alignments
Tim Reddy, Duke
Content Summary
unfiltered alignments
AnalysisSe
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: HG02594, HG02611, HG02623, HG02635, HG02645
released
validated
AlignmentFile
IGVFFI2969FDGZ
bam - unfiltered alignments
Tim Reddy, Duke
Content Summary
unfiltered alignments
AnalysisSe
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA18505, NA18909, NA18916, NA18923, NA19175
released
validated
AlignmentFile
IGVFFI3680NTHN
bam - filtered transcriptome alignments
Charles Gersbach, Duke
Content Summary
filtered transcriptome alignments
AnalysisSe
RNA-seq integrating an expression vector library of BATF3 and a reference transduction expression vector library with reference transduction control
released
validated
AlignmentFile
IGVFFI6412YUBF
bam - unfiltered alignments
Maya Kasowski, Stanford
Content Summary
unfiltered alignments
MeasurementSe
WGS
released
validated
AlignmentFile
IGVFFI9097APHN
bam - unfiltered alignments
Charles Gersbach, Duke
Content Summary
unfiltered alignments
AnalysisSe
CRISPR knockout FACS screen targeting IL7R integrating a guide (sgRNA) library targeting transcription start sites in many genes with low FACS signal control
released
validated
AlignmentFile
IGVFFI5631FWFB
bam - unfiltered alignments
Tim Reddy, Duke
Content Summary
unfiltered alignments
AnalysisSe
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA18505, NA18909, NA18916, NA18923, NA19175
released
validated

Content Type

File Format

Filtered

Redacted

Assembly

Controlled Access

Data Use Limitation

File Size

File Set Type

Preferred Assay Title

Assay

Taxa

Sample

Classification

Cellular Transformation Target

Modification

Treatment

Workflow

Uniformly Processed

Lab

Award

Upload Status

Status