Home

IGVFFI6004VZDI

released
validated
File Set
IGVFDS2302NLIO(ATAC-seq: alignments, fold change over control, peak quantifications)
Summary
GRCh38 filtered alignments
Analysis Step Version
/analysis-step-versions/c95d766a-a900-4694-8065-e12651f618ba/
File Format
bam
Content Type
alignments
Content Summary
filtered alignments
Aliases
charles-gersbach:cd8-tcells-atac-seq-acute-activation-gfp-bam-rep3
md5sum
64658b629abd695a26fde24745719f66
Content MD5sum
346dd360549c0257999f517e1b69446e
File Size
1.1 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/SCM-69-rep3.masked.dups_marked.bam
Checkfiles Version
Legacy version of checkfiles

Alignment Details

Reference Files
Filtered
True
Genome Assembly
GRCh38

Samples

6 items
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library

Files This File Derives From

2 items
fastq
reads
Charles Gersbach, Duke
836 MB
validated
fastq
reads
Charles Gersbach, Duke
828 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
peak quantifications
GRCh38 peak quantifications
Charles Gersbach, Duke
2.5 MB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke