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IGVFFI4228AGRI

released
validated
File Set
IGVFDS4681TSQU(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
GRCm39 unfiltered alignments
Analysis Step Version
/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/
File Format
bam
Content Type
alignments
Content Summary
unfiltered alignments
Aliases
buenrostro-bernstein:IGVFDS4681TSQU_bam
md5sum
d8a5e404e41f711eb01a69999a7fb47e
Content MD5sum
85443836d7bcecb9217f4a8df6fd9b26
File Size
20 GB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/dbe66b20-ce01-402b-bd70-5e9d0d878ab2/call-atac/wf_atac/a6e03b09-d082-40d3-8444-783f3819e0a5/call-generate_bam/SS-PKR-435.bam
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Alignment Details

Reference Files
Genome Assembly
GRCm39

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 435)

Files This File Derives From

15 items
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
fastq
reads
Jason Buenrostro, Broad
7.8 GB
validated
fastq
reads
Jason Buenrostro, Broad
7.7 GB
validated
fastq
reads
Jason Buenrostro, Broad
11 GB
validated
fastq
reads
Jason Buenrostro, Broad
11 GB
validated
fastq
reads
Jason Buenrostro, Broad
6.8 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
bai
index
index of IGVFFI4228AGRI
Jason Buenrostro, Broad
5.3 MB
validated