IGVFFI4228AGRI

1{
2    "@context": "/terms/",
3    "@id": "/alignment-files/IGVFFI4228AGRI/",
4    "@type": [
5        "AlignmentFile",
6        "File",
7        "Item"
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9    "accession": "IGVFFI4228AGRI",
10    "aliases": [
11        "buenrostro-bernstein:IGVFDS4681TSQU_bam"
12    ],
13    "analysis_step_version": "/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/",
14    "assay_titles": [
15        "SHARE-seq"
16    ],
17    "assembly": "GRCm39",
18    "audit": {},
19    "award": {
20        "@id": "/awards/HG011986/",
21        "component": "mapping"
22    },
23    "checkfiles_version": "v20",
24    "content_md5sum": "85443836d7bcecb9217f4a8df6fd9b26",
25    "content_summary": "unfiltered alignments",
26    "content_type": "alignments",
27    "controlled_access": false,
28    "creation_timestamp": "2025-03-27T01:06:54.145853+00:00",
29    "derived_from": [
30        "/sequence-files/IGVFFI7886EYCG/",
31        "/sequence-files/IGVFFI1194WFRQ/",
32        "/sequence-files/IGVFFI0202KWGE/",
33        "/sequence-files/IGVFFI8371AUNQ/",
34        "/sequence-files/IGVFFI3502EOYB/",
35        "/sequence-files/IGVFFI3420RCKG/",
36        "/sequence-files/IGVFFI1545WPGA/",
37        "/sequence-files/IGVFFI6773USPP/",
38        "/sequence-files/IGVFFI7099FUVH/",
39        "/sequence-files/IGVFFI8918FMWS/",
40        "/configuration-files/IGVFFI7983WCRU/",
41        "/configuration-files/IGVFFI4322UUZN/",
42        "/configuration-files/IGVFFI5373MZTL/",
43        "/configuration-files/IGVFFI9441NKAS/",
44        "/configuration-files/IGVFFI8993BLAC/"
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55        "accession": "IGVFDS4681TSQU",
56        "data_use_limitation_summaries": [
57            "no certificate"
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59        "file_set_type": "intermediate analysis",
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61            {
62                "@id": "/tissues/IGVFSM4121TWUU/",
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76                        "status": "released",
77                        "term_name": "brain"
78                    }
79                ],
80                "status": "released",
81                "summary": "Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 435)",
82                "taxa": "Mus musculus"
83            }
84        ],
85        "status": "released",
86        "summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)"
87    },
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89    "filtered": false,
90    "gene_list_for": [],
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93        "/index-files/IGVFFI6974PJQH/"
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95    "integrated_in": [],
96    "lab": {
97        "@id": "/labs/jason-buenrostro/",
98        "title": "Jason Buenrostro, Broad"
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100    "loci_list_for": [],
101    "md5sum": "d8a5e404e41f711eb01a69999a7fb47e",
102    "quality_metrics": [
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105    "read_count": 901881925,
106    "redacted": false,
107    "reference_files": [
108        "/reference-files/IGVFFI5593VLWB/",
109        "/reference-files/IGVFFI9282QLXO/"
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111    "release_timestamp": "2025-05-07T20:35:08.308849+00:00",
112    "s3_uri": "s3://igvf-files/2025/03/27/6e69b143-f73f-4361-803e-9a92dc1a4ba5/IGVFFI4228AGRI.bam",
113    "schema_version": "16",
114    "status": "released",
115    "submitted_by": {
116        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
117        "title": "Siddarth Wekhande"
118    },
119    "submitted_file_name": "gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/dbe66b20-ce01-402b-bd70-5e9d0d878ab2/call-atac/wf_atac/a6e03b09-d082-40d3-8444-783f3819e0a5/call-generate_bam/SS-PKR-435.bam",
120    "summary": "GRCm39 unfiltered alignments",
121    "upload_status": "validated",
122    "uuid": "6e69b143-f73f-4361-803e-9a92dc1a4ba5",
123    "workflow": {
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125        "name": "igvf single cell uniform pipeline",
126        "uniform_pipeline": true
127    }
128}