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IGVFFI3376UGYD

released
validated
File Set
IGVFDS1013MILB(ATAC-seq: alignments)
Summary
GRCh38 filtered alignments
Analysis Step Version
/analysis-step-versions/c95d766a-a900-4694-8065-e12651f618ba/
File Format
bam
Content Type
alignments
Content Summary
filtered alignments
Aliases
charles-gersbach:cd8-tcells-atac-seq-acute-activation-batf3-bam-rep3
md5sum
8e09c0de4c1460dc31b54a47364271ef
Content MD5sum
872f5b54e8c74aca6576e07d290e8f8f
File Size
1.8 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/SCM-70-rep3.masked.dups_marked.bam

Alignment Details

Reference Files
Filtered
True

Samples

3 items
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library

Files This File Derives From

2 items
fastq
reads
Charles Gersbach, Duke
1.4 GB
validated
fastq
reads
Charles Gersbach, Duke
1.5 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
peak quantifications
GRCh38 peak quantifications
Charles Gersbach, Duke
2.5 MB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke