IGVFFI1995JCIO

released

validated

File Set

IGVFDS7944XZYE(CRISPR knockout FACS screen targeting IL7R: alignments)

Summary

custom assembly unfiltered alignments

Analysis Step Version

/analysis-step-versions/f9f6ae88-d515-4e49-9902-deea3cf87703/

File Format

bam

Content Type

alignments

Content Summary

unfiltered alignments

Aliases

charles-gersbach:cd8-tcells-alignment-crispr-ko-tfome-batf3-over-low-bin-rep2

md5sum

56b86d4fa9f50c1363e3710f3b4e5ebe

Content MD5sum

1750676808162c8f69d1454342e6191b

File Size

446 MB

Submitted File Name

/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/pSM74_L3_S9.sorted.bam

Alignment Details

Reference Files

IGVFFI0626PVXM

Samples

4 items

Sample Terms

Summary

IGVFSM3895SURE

PrimaryCell

CD8-positive, alpha-beta memory T cell

CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 0-10% expression of IL7R in cells overexpressing BATF3) modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM7158ADKU

PrimaryCell

CD8-positive, alpha-beta memory T cell

IGVFSM7887TFLH

PrimaryCell

CD8-positive, alpha-beta memory T cell

CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 90-100% expression of IL7R in cells overexpressing BATF3) modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM8084QKPW

PrimaryCell

CD8-positive, alpha-beta memory T cell