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IGVFFI1477HUUT

released
validated
File Set
IGVFDS6924DJJC(CRISPR knockout RNA-seq integrating a non-targeting guide (sgRNA) library with non-targeting control)
Summary
GRCh38 filtered transcriptome alignments
Analysis Step Version
/analysis-step-versions/7298947c-9675-4de2-933a-642bde562751/
File Format
bam
Content Type
transcriptome alignments
Content Summary
filtered transcriptome alignments
Aliases
charles-gersbach:cd8-tcells-rna-seq-cas-ko-nt-bam-rep1
md5sum
995099899d39f8e2069bbaecc3c8a861
Content MD5sum
7568e940ba0af8bd219ae091d6032d92
File Size
2.3 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8.rnaseq.pSM73.nt.d1.star2.Aligned.out.sorted.bam
Checkfiles Version
Legacy version of checkfiles
Attribution
Charles Gersbach, Duke

Alignment Details

Reference Files
Filtered
True
Genome Assembly
GRCh38

Samples

3 items
Sample Terms
Summary
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Files This File Derives From

2 items
fastq
reads
Charles Gersbach, Duke
2.6 GB
validated
fastq
reads
Charles Gersbach, Duke
2.4 GB
validated

Files Derived From This File

2 items
tsv
transcript quantifications
GRCh38 transcript quantifications
Charles Gersbach, Duke
547 KB
validated
tsv
transcript quantifications
GRCh38 transcript quantifications
Charles Gersbach, Duke
549 KB
validated