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INDEXED
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AlignmentFile
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IGVFFI1477HUUT
IGVFFI1477HUUT
released
validated
Json view
File Set
IGVFDS6924DJJC
(knockout RNA-seq: transcriptome alignments)
Summary
GRCh38 filtered transcriptome alignments
Analysis Step Version
/analysis-step-versions/7298947c-9675-4de2-933a-642bde562751/
File Format
bam
Content Type
transcriptome alignments
Content Summary
filtered transcriptome alignments
Aliases
charles-gersbach:cd8-tcells-rna-seq-cas-ko-nt-bam-rep1
md5sum
995099899d39f8e2069bbaecc3c8a861
Content MD5sum
7568e940ba0af8bd219ae091d6032d92
File Size
2.3 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8.rnaseq.pSM73.nt.d1.star2.Aligned.out.sorted.bam
Alignment Details
Reference Files
IGVFFI0653VCGH
Filtered
True
Samples
3 items
Accession
Type
Sample Terms
Summary
IGVFSM0383IKGE
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
IGVFSM1498WFCO
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
IGVFSM6537MPGY
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
Files This File Derives From
2 items
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
IGVFFI0722IZBI
IGVFDS4169BMPH
fastq
reads
Charles Gersbach, Duke
2.6 GB
validated
IGVFFI2816JQJF
IGVFDS4169BMPH
fastq
reads
Charles Gersbach, Duke
2.4 GB
validated
Files Derived From This File
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI2071KQLY
tsv
transcript quantifications
GRCh38 transcript quantifications
Charles Gersbach, Duke
547 KB
validated
IGVFFI7900YIDY
tsv
transcript quantifications
GRCh38 transcript quantifications
Charles Gersbach, Duke
549 KB
validated
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke