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IGVFFI0876EPIM

released
validated
File Set
IGVFDS0635KHHW(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
GRCm39 unfiltered alignments
Analysis Step Version
/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/
File Format
bam
Content Type
alignments
Content Summary
unfiltered alignments
Aliases
buenrostro-bernstein:IGVFDS0635KHHW_bam
md5sum
58e170bd465d25133df00a952a5ba77f
Content MD5sum
2eee59bdf8bcc7a3b70aedf84342f8c0
File Size
3.0 GB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/a6d4a8e2-651e-421f-ae34-bfdf4cf1f42e/single_cell_pipeline/225aed6b-71f4-42ae-989a-45619457db1e/call-atac/wf_atac/0187a2d3-be98-4679-aa42-6e9d43d160ba/call-generate_bam/SS-PKR-130.bam
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Alignment Details

Reference Files
Genome Assembly
GRCm39

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)

Files This File Derives From

18 items
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
fastq
reads
Jason Buenrostro, Broad
635 MB
validated
fastq
reads
Jason Buenrostro, Broad
121 MB
validated
fastq
reads
Jason Buenrostro, Broad
224 MB
validated
fastq
reads
Jason Buenrostro, Broad
633 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
bai
index
index of IGVFFI0876EPIM
Jason Buenrostro, Broad
2.2 MB
validated