IGVFFI0753LZLZ

released
validated
File Set
IGVFDS6924DJJC(knockout RNA-seq: transcriptome alignments)
Summary
GRCh38 filtered transcriptome alignments
Analysis Step Version
File Format
bam
Content Type
transcriptome alignments
Content Summary
filtered transcriptome alignments
Aliases
charles-gersbach:cd8-tcells-rna-seq-cas-ko-nt-bam-rep3
md5sum
cdfb9690a548e5f36aead944b0cfb605
Content MD5sum
32c977829bb16aa0bddba6825518d7f5
File Size
2.7 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8.rnaseq.pSM73.nt.d3.star2.Aligned.out.sorted.bam

Alignment Details

Reference Files
Filtered
True

Samples

3 items
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Files This File Derives From

2 items
fastq
reads
Charles Gersbach, Duke
2.8 GB
validated
fastq
reads
Charles Gersbach, Duke
3.0 GB
validated

Files Derived From This File

2 items
tsv
transcript quantifications
GRCh38 transcript quantifications
Charles Gersbach, Duke
547 KB
validated
tsv
transcript quantifications
GRCh38 transcript quantifications
Charles Gersbach, Duke
549 KB
validated

Attribution