MAGeCK CRISPR screen workflow

released

Name

MAGeCK CRISPR screen workflow

Uniform Pipeline

No

Source URL

https://github.com/liulab-dfci/MAGeCK

Aliases

daniel-bauer:proliferation_crispr_screen_workflow

Analysis Steps

2 items

Aliases

Input Content Types

Output Content Types

IGVFWF7224ABWD-mageck-mapped-counts-generation-step

MAGeCK mapped counts generation step

mageck-mapped-counts-generation-step

reads

guide quantifications

IGVFWF7224ABWD-mageck-modeling-step

MAGeCK modeling step

mageck-modeling-step

guide quantifications

guide quantifications, variant effects

Attribution

Award

Principal Investigator(s)

Benhur Lee, Benjamin Kleinstiver, Richard Sherwood, Luca Pinello, Guillaume Lettre, Daniel Bauer

Contact P.I.

Lab

Daniel Bauer, HSCI