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Software
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deseq2
4
samtools
3
anndata
1
bamtools
1
bowtie
1
bowtie2
1
bustools
1
cellranger
1
harmonypy
1
kallisto
1
See all 16 terms
Analysis Step Types
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quantification
5
alignment
3
signal generation
3
filtering
2
counts normalization
1
merging
1
peak calling
1
Output Types
All
None
fold change over control
3
alignments
2
differential gene expression quantifications
1
filtered feature barcode matrix
1
guide quantifications
1
peak quantifications
1
raw feature barcode matrix
1
sparse gene count matrix
1
transcript quantifications
1
transcriptome alignments
1
25 Items
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300 Items
6 items
Workflow
IGVFWF7562QXLM
Cell Ranger Gene Count Pipeline
External Lab, Community
released
Workflow
IGVFWF6241JYDF
UCI snRNA-seq workflow
Ali Mortazavi, UCI
released
Workflow
IGVFWF5701UESO
Gersbach Perturb-seq workflow
Charles Gersbach, Duke
released
Workflow
IGVFWF6411VZLF
Gersbach GGR ATAC-seq Pipeline
Charles Gersbach, Duke
released
Workflow
IGVFWF8837BHJV
Gersbach FACS CRISPR screen workflow
Charles Gersbach, Duke
released
Workflow
IGVFWF6270QWBB
Gersbach GGR RNA-seq Pipeline
Charles Gersbach, Duke
released