Shendure scATAC-seq Pipeline

released

Name

Shendure scATAC-seq Pipeline

Uniform Pipeline

No

Source URL

https://github.com/shendurelab/scQers/tree/main/scripts/scATAC_processing

Attribution

Jay Shendure, UW

(

HG011966 — Jay Shendure

)

Analysis Steps

3 items

Aliases

Input Content Types

Output Content Types

IGVFWF7196TNJP-scatac-seq-fragment-alignment-step

scATAC-seq fragment alignment step

scatac-seq-fragment-alignment-step

reads

fragments

IGVFWF7196TNJP-scatac-seq-peak-calling-step

scATAC-seq peak calling step

scatac-seq-peak-calling-step

fragments

peaks

IGVFWF7196TNJP-scatac-seq-signal-generation-step

scATAC-seq signal generation step

scatac-seq-signal-generation-step

peaks

signal, sparse peak count matrix