SUPERSTARR Pipeline

SUPERSTARR Alignment step

superstarr-alignment-step

genome reference, reads

alignments, index

SUPERSTARR Personalized Genome Assembly Step

superstarr-personalized-genome-assembly-step

genome reference, variants

genome reference

SUPERSTARR Variant Annotation Step

superstarr-variant-annotation-step

reporter variants

reporter genomic variant effects

SUPERSTARR Variant Quantification Step

superstarr-variant-quantification-step

alignments

reporter variants