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UCI snRNA-seq workflow

released
Name
UCI snRNA-seq workflow
Description
A workflow developed by the Mortazavi lab (UCI) to pre-process Parse Split-seq data.
Source URL
https://github.com/mortazavilab/parse_pipeline
Aliases
ali-mortazavi:uci-parse-split-seq-workflow
Attribution
Ali Mortazavi, UCI

Analysis Steps

3 items
Aliases
Input Content Types
Output Content Types
UCI snRNA-seq counts normalization and filtering step
uci-scrna-seq-counts-normalization-and-filtering-step
  • ali-mortazavi:uci-scrna-seq-counts-normalization-and-filtering-step
sparse gene count matrix
sparse gene count matrix
UCI snRNA-seq Kallisto quantification step
uci-scrna-seq-kallisto-quantification-step
  • ali-mortazavi:uci-scrna-seq-kallisto-quantification-step
reads
sparse gene count matrix
UCI snRNA-seq subpool merging step
uci-scrna-seq-subpool-merging-step
  • ali-mortazavi:uci-scrna-seq-subpool-merging-step
sparse gene count matrix
sparse gene count matrix