UCI snRNA-seq workflow

released

Name

UCI snRNA-seq workflow

Description

A workflow developed by the Mortazavi lab (UCI) to pre-process Parse Split-seq data.

Source URL

https://github.com/mortazavilab/parse_pipeline

Aliases

ali-mortazavi:uci-parse-split-seq-workflow

Analysis Steps

3 items

Aliases

Input Content Types

Output Content Types

IGVFWF6241JYDF-uci-scrna-seq-counts-normalization-and-filtering-step

UCI snRNA-seq counts normalization and filtering step

uci-scrna-seq-counts-normalization-and-filtering-step

ali-mortazavi:uci-scrna-seq-counts-normalization-and-filtering-step

sparse gene count matrix

sparse gene count matrix

IGVFWF6241JYDF-uci-scrna-seq-kallisto-quantification-step

UCI snRNA-seq Kallisto quantification step

uci-scrna-seq-kallisto-quantification-step

ali-mortazavi:uci-scrna-seq-kallisto-quantification-step

reads

sparse gene count matrix

IGVFWF6241JYDF-uci-scrna-seq-subpool-merging-step

UCI snRNA-seq subpool merging step

uci-scrna-seq-subpool-merging-step

ali-mortazavi:uci-scrna-seq-subpool-merging-step

sparse gene count matrix

sparse gene count matrix

Attribution

Award

Principal Investigator(s)

Lior Pachter, Kim Green, Grant MacGregor, Ali Mortazavi, Barbara Wold

Contact P.I.

Lab

Ali Mortazavi, UCI