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Satpathy Cell Ranger

released
Name
Satpathy Cell Ranger
Uniform Pipeline
No
Source URL
https://github.com/chris-mcginnis-ucsf/IGVF
Aliases
ansuman-satpathy:chris-m-cell-ranger-workflow

Analysis Steps

4 items
Aliases
Input Content Types
Output Content Types
Satpathy Barcode Mapping Generation Step
satpathy-barcode-mapping-generation-step
  • ansuman-satpathy:satpathy-barcode-mapping-generation-step
reads
cell hashing barcodes
Satpathy Fragment Generation Step
satpathy-fragment-generation-step
  • ansuman-satpathy:satpathy-fragment-generation-step
reads
fragments
Satpathy Matrix Generation Step
satpathy-matrix-generation-step
  • ansuman-satpathy:satpathy-matrix-generation-step
reads
raw feature barcode matrix
Satpathy Peaks Generation Step
satpathy-peaks-generation-step
  • ansuman-satpathy:satpathy-peaks-generation-step
fragments
peaks

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford