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substantia nigra — IGVFSM0613PQFW

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This object is in preview status. Metadata is subject to change until this object is released.
Summary
Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment
Sample Terms
Sex
female
Age
84 years
Post-mortem Interval
300 minutes
Preservation Method
flash-freezing
Taxa
Homo sapiens
Sources
banner-health
Date Harvested
December 5, 2022
Aliases
igvf:corces_tissue_BANN2118_SN
Protocols

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:corces_donor_BANN2118
female
Homo sapiens

File Sets

54 items
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP028_G5_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_RP003_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP003_G9_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP003_G5_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP003_G3_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP003_G7_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP003_G6_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X020_G4_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP028_G1_RNA
Ryan Corces, Gladstone Institute UCSF
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_RP028_G2_ATAC
Ryan Corces, Gladstone Institute UCSF

Multiplexed In Samples

27 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
MultiplexedSample
multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF