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IGVFFI9965ETTU

released
validation exempted
File Set
IGVFDS2175LLDQ(SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants)
Summary
GRCh38 reporter variants
Analysis Step Version
/analysis-step-versions/c8de4554-6fda-4373-aa41-5574220df999/
File Format
tsv
Content Type
reporter variants
Aliases
tim-reddy:starr-seq-bird-input-file-P014
md5sum
f70ec10944d88d22845bcc5e4cb11e14
Content MD5sum
1bbbb5a14d1d1eba11bd922b41c6bb17
File Size
51 MB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.bird_input.spdi.pool14.txt.gz
Checkfiles Version
v16
Attribution
Bill Majoros, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Preview
BIRD input file format as described in http://www.geneprediction.org/bird
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

2 items
bam
alignments
Tim Reddy, Duke
11 GB
validated
bam
alignments
Tim Reddy, Duke
8.5 GB
validated

Files Derived From This File

2 items
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
266 MB
validated
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
121 MB
validated