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IGVFFI9840RCXB

released
validation exempted
File Set
IGVFDS5192PMWB(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf6_peaks_10x3
md5sum
1d77703c0badd2995430005c7e4091b3
Content MD5sum
a7397e4994b490bf1ae731cf0e47f327
File Size
2.4 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf6/e6l3_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum a7397e4994b490bf1ae731cf0e47f327 does not match newly calculated md5sum 1d77703c0badd2995430005c7e4091b3.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/87f37b54-1a37-4fc6-ab13-22f4c65cbc4a/IGVFFI9840RCXB.bed.gz, line=295455]: chrom KI270728.1 not found [KI270728.1\t232285\t233180]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days; Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days; ... and 6 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
7.3 GB
validation exempted