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IGVFFI9775SYBY

released
validated
File Set
IGVFDS7801YPEU(scATAC-seq: fragments, peaks, signal, sparse peak count matrix)
Summary
GRCm39 peaks
Analysis Step Version
/analysis-step-versions/03ace48b-7454-43ad-accb-d17ab9ce57d5/
File Format
tsv
Content Type
peaks
Aliases
jay-shendure:tabularfile_CREs_scATAC_Peaks_bedfile_LaLanne
md5sum
b920b357debdd3261e11fa0ba8127aaf
Content MD5sum
62d17bb551775b98d3a6c4d0c5bf7462
File Size
2.7 MB
Submitted File Name
/net/shendure/vol1/home/martin91/IGVF/forupload/scQers/peak_set_scATAC_mEB_d21_mm39_20241120.bed.gz
Checkfiles Version
Legacy version of checkfiles

Reference Source Details

Genome Assembly
GRCm39

File Format Specifications

Samples

4 items
Sample Terms
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44

Files This File Derives From

4 items
tsv
fragments
Jay Shendure, UW
1.6 GB
validated
tsv
fragments
Jay Shendure, UW
1.6 GB
validated
tsv
fragments
Jay Shendure, UW
1.5 GB
validated
tsv
fragments
Jay Shendure, UW
1.6 GB
validated

Files Derived From This File

8 items
mtx
sparse peak count matrix
cell by peak in sparse peak count matrix
Jay Shendure, UW
470 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
87 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
202 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
53 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
71 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
126 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
120 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
77 MB
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW