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IGVFFI9767OQYE

released
validated
File Set
IGVFDS9720UJIP(HiCAR: bin paired count, differential chromatin contact quantifications)
Summary
GRCh38 bin paired count
Analysis Step Version
/analysis-step-versions/7a065c7f-9076-4e55-ae0a-8c0ae1b1c13e/
File Format
tsv
Content Type
bin paired count
Aliases
charles-gersbach:tabular-file-crispra-stim-ctrl-region3-count
md5sum
c64d5c1ff68631df0b1b7ca07f0c13fc
Content MD5sum
626b49c9d55eb400861971863af8bcf4
File Size
2.1 KB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/Count_matrix_and_DESeq2/CRISPRa.stim_vs_ctrl_Union_in_TA448_10kb_count_mat_CRISPRi_range_res_10kb.tsv.gz

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

6 items
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library

Files This File Derives From

6 items
cool
contact matrix
Charles Gersbach, Duke
8.6 MB
validated
cool
contact matrix
Charles Gersbach, Duke
7.5 MB
validated
cool
contact matrix
Charles Gersbach, Duke
6.5 MB
validated
cool
contact matrix
Charles Gersbach, Duke
10 MB
validated
cool
contact matrix
Charles Gersbach, Duke
8.5 MB
validated
cool
contact matrix
Charles Gersbach, Duke
8.5 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
differential chromatin contact quantifications
GRCh38 differential chromatin contact quantifications
Charles Gersbach, Duke
7.8 KB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke