IGVFFI9764GKVR

released
validated
1{
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9    "accession": "IGVFFI9764GKVR",
10    "aliases": [
11        "buenrostro-bernstein:surya-human-organoid-atac-frag"
12    ],
13    "analysis_step_version": "/analysis-step-versions/e27a16d2-c700-405f-92c4-89efe1a558ce/",
14    "assay_titles": [
15        "SHARE-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011986/",
20        "component": "mapping"
21    },
22    "barcode_map_for": [],
23    "checkfiles_version": "v17",
24    "content_md5sum": "36a71d428ae6fbe8ec35a8bc9133408b",
25    "content_type": "fragments",
26    "controlled_access": false,
27    "creation_timestamp": "2025-03-06T16:56:56.030217+00:00",
28    "derived_from": [
29        "/sequence-files/IGVFFI9846ECMS/",
30        "/sequence-files/IGVFFI1915BHZZ/"
31    ],
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33    "file_format_specifications": [
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43        "accession": "IGVFDS0718WXPI",
44        "file_set_type": "intermediate analysis",
45        "samples": [
46            {
47                "@id": "/in-vitro-systems/IGVFSM7625PGWV/",
48                "@type": [
49                    "InVitroSystem",
50                    "Biosample",
51                    "Sample",
52                    "Item"
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54                "accession": "IGVFSM7625PGWV",
55                "classifications": [
56                    "organoid"
57                ],
58                "sample_terms": [
59                    {
60                        "@id": "/sample-terms/CL_0011108/",
61                        "status": "released",
62                        "term_name": "colon epithelial cell"
63                    }
64                ],
65                "status": "released",
66                "summary": "Homo sapiens colon epithelial cell organoid induced to colon for 7 days",
67                "targeted_sample_term": {
68                    "@id": "/sample-terms/UBERON_0001155/",
69                    "status": "released",
70                    "term_name": "colon"
71                },
72                "taxa": "Homo sapiens"
73            }
74        ],
75        "status": "released",
76        "summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq): fragments, sparse gene count matrix"
77    },
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79    "gene_list_for": [],
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81    "input_file_for": [],
82    "integrated_in": [],
83    "lab": {
84        "@id": "/labs/jason-buenrostro/",
85        "title": "Jason Buenrostro, Broad"
86    },
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88    "md5sum": "17dcfe73b68c88c636982c553da9b3ea",
89    "quality_metrics": [],
90    "release_timestamp": "2025-03-26T19:25:47.961336+00:00",
91    "s3_uri": "s3://igvf-files/2025/03/06/cc1d12c6-4a61-401c-bbb8-21314b1d6cd0/IGVFFI9764GKVR.tsv.gz",
92    "schema_version": "15",
93    "status": "released",
94    "submitted_by": {
95        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
96        "title": "Siddarth Wekhande"
97    },
98    "submitted_file_name": "gs://sw-igvf-submission/surya-mouse-colitis/processed-data/human_organoids.fragments.tsv.gz",
99    "summary": "fragments",
100    "upload_status": "validated",
101    "uuid": "cc1d12c6-4a61-401c-bbb8-21314b1d6cd0",
102    "workflow": {
103        "@id": "/workflows/IGVFWF0507XZOR/",
104        "name": "SHARE-seq-alignmentV2",
105        "uniform_pipeline": false
106    }
107}