IGVFFI9749KBRZ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI9749KBRZ/",
4    "@type": [
5        "TabularFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9749KBRZ",
10    "aliases": [
11        "tim-reddy:starr-seq-bird-reporter-variant-file-P020"
12    ],
13    "assay_titles": [
14        "SUPERSTARR"
15    ],
16    "assembly": "GRCh38",
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011967/",
20        "component": "predictive modeling"
21    },
22    "barcode_map_for": [],
23    "checkfiles_version": "v20",
24    "content_md5sum": "bc5be2e584b0ae36dc4a0e134c073a4b",
25    "content_type": "reporter genomic variant effects",
26    "controlled_access": false,
27    "creation_timestamp": "2025-03-13T21:13:18.776253+00:00",
28    "derived_from": [
29        "/tabular-files/IGVFFI7654YISU/",
30        "/tabular-files/IGVFFI3950UKLA/"
31    ],
32    "derived_manually": true,
33    "file_format": "tsv",
34    "file_format_specifications": [
35        "/documents/435a7653-996b-49cc-b8e3-ee790d1d7510/"
36    ],
37    "file_set": {
38        "@id": "/analysis-sets/IGVFDS6846CJYR/",
39        "@type": [
40            "AnalysisSet",
41            "FileSet",
42            "Item"
43        ],
44        "accession": "IGVFDS6846CJYR",
45        "file_set_type": "principal analysis",
46        "samples": [
47            {
48                "@id": "/in-vitro-systems/IGVFSM0106EWET/",
49                "@type": [
50                    "InVitroSystem",
51                    "Biosample",
52                    "Sample",
53                    "Item"
54                ],
55                "accession": "IGVFSM0106EWET",
56                "classifications": [
57                    "cell line"
58                ],
59                "sample_terms": [
60                    {
61                        "@id": "/sample-terms/EFO_0002067/",
62                        "status": "released",
63                        "term_name": "K562"
64                    }
65                ],
66                "status": "released",
67                "summary": "Homo sapiens (female) K562 cell line transfected with a reporter library",
68                "taxa": "Homo sapiens"
69            }
70        ],
71        "status": "released",
72        "summary": "SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants"
73    },
74    "file_size": 240982694,
75    "gene_list_for": [],
76    "href": "/tabular-files/IGVFFI9749KBRZ/@@download/IGVFFI9749KBRZ.tsv.gz",
77    "input_file_for": [],
78    "integrated_in": [],
79    "lab": {
80        "@id": "/labs/bill-majoros/",
81        "title": "Bill Majoros, Duke"
82    },
83    "loci_list_for": [],
84    "md5sum": "12c112235b47f1dc7509dcc8121e9e4e",
85    "primer_design_for": [],
86    "quality_metrics": [],
87    "release_timestamp": "2025-04-09T16:40:17.806504+00:00",
88    "s3_uri": "s3://igvf-files/2025/03/13/9d033fc2-c97c-4c95-a078-4ee478af60ee/IGVFFI9749KBRZ.tsv.gz",
89    "schema_version": "15",
90    "status": "released",
91    "submitted_by": {
92        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
93        "title": "Alejandro Barrera"
94    },
95    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.bird_reporter_variant.pool20.na_empty.txt.gz",
96    "summary": "GRCh38 reporter genomic variant effects",
97    "upload_status": "validated",
98    "uuid": "9d033fc2-c97c-4c95-a078-4ee478af60ee"
99}