IGVFFI9643YRGK

released
validated
{
    "@context": "/terms/",
    "@id": "/tabular-files/IGVFFI9643YRGK/",
    "@type": [
        "TabularFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI9643YRGK",
    "aliases": [
        "bill-majoros:bluestarr-k562-prediction-file-v0.1.1"
    ],
    "analysis_step_version": "/analysis-step-versions/f177d6b8-48b1-4d58-af7c-5c50da2b0e25/",
    "assay_titles": [],
    "assembly": "GRCh38",
    "audit": {},
    "award": {
        "@id": "/awards/HG011967/",
        "component": "predictive modeling"
    },
    "barcode_map_for": [],
    "checkfiles_version": "v14",
    "content_md5sum": "edfa5cfbcb9a8caa4c3dc00fa2841ed7",
    "content_type": "variant effects",
    "controlled_access": false,
    "creation_timestamp": "2025-02-04T21:06:20.187159+00:00",
    "derived_from": [
        "/reference-files/IGVFFI3932HEZL/",
        "/model-files/IGVFFI1704UATO/",
        "/model-files/IGVFFI7316UCOH/"
    ],
    "description": "File of predictions of mutation effect at every based in ENCODE cCREs across hg38, merged from 1064 chunks and converted to BED format",
    "file_format": "bed",
    "file_format_specifications": [
        "/documents/a61b28ae-0d57-49e4-b56e-00acbad6330a/"
    ],
    "file_format_type": "bed3+",
    "file_set": {
        "@id": "/prediction-sets/IGVFDS2340WJRV/",
        "@type": [
            "PredictionSet",
            "FileSet",
            "Item"
        ],
        "accession": "IGVFDS2340WJRV",
        "file_set_type": "functional effect",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM7883WOIS/",
                "@type": [
                    "InVitroSystem",
                    "Biosample",
                    "Sample",
                    "Item"
                ],
                "accession": "IGVFSM7883WOIS",
                "classifications": [
                    "cell line"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0002067/",
                        "status": "released",
                        "term_name": "K562"
                    }
                ],
                "status": "released",
                "summary": "virtual Homo sapiens (female) K562 cell line",
                "taxa": "Homo sapiens"
            }
        ],
        "status": "released",
        "summary": "functional effect prediction on scope of loci"
    },
    "file_size": 2837852648,
    "filtered": false,
    "gene_list_for": [],
    "href": "/tabular-files/IGVFFI9643YRGK/@@download/IGVFFI9643YRGK.bed.gz",
    "input_file_for": [
        "/tabular-files/IGVFFI1663LKVQ/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/bill-majoros/",
        "title": "Bill Majoros, Duke"
    },
    "loci_list_for": [],
    "md5sum": "ee57169fb71a3c5c8060c0908abf6421",
    "quality_metrics": [],
    "release_timestamp": "2025-03-17T21:40:58.066097+00:00",
    "s3_uri": "s3://igvf-files/2025/02/04/786b2f83-5cfc-4d65-b4d6-735e6cce1052/IGVFFI9643YRGK.bed.gz",
    "schema_version": "15",
    "status": "released",
    "submitted_by": {
        "@id": "/users/a53b8173-d4ac-4f0b-b578-23156ca1f934/",
        "title": "Brendan Kearney"
    },
    "submitted_file_name": "/data/reddylab/btk20/IGVF_submissions/allpred.bed.gz",
    "summary": "GRCh38 predictive unfiltered variant effects",
    "upload_status": "validated",
    "uuid": "786b2f83-5cfc-4d65-b4d6-735e6cce1052",
    "workflow": {
        "@id": "/workflows/IGVFWF3101OPAH/",
        "name": "BlueSTARR workflow",
        "uniform_pipeline": false
    }
}